Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 11,712,823 – 11,712,944 |
Length | 121 |
Max. P | 0.910039 |
Location | 11,712,823 – 11,712,923 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 81.36 |
Mean single sequence MFE | -22.73 |
Consensus MFE | -21.45 |
Energy contribution | -21.57 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -0.49 |
Structure conservation index | 0.94 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.819624 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11712823 100 + 23771897 UCUCCGCCUCCUUUGAGGUCCUUGCCACACACCACCACCCCCUCCCCCCCCUGCGCUGCCCCACCGCUUGGCACGUGUAUGCGUCACGUCGCCUGGUUCA .....(((((....)))))....((((.........................(((.((...)).)))..((((((((.......))))).)))))))... ( -21.60) >DroSec_CAF1 26045 79 + 1 UCGCCGCCUCCUUUGAGGUCCUUGCCACAACC---------------------CGGUGCCCCACCGCUUGGUACGUGUAUGCGUCACGUCGCCUGGUUCA .....(((((....)))))....((((.....---------------------(((((...)))))...((((((((.......))))).)))))))... ( -22.30) >DroSim_CAF1 21975 79 + 1 UCGCCGCCUCCUUUGAGGUCCUUGCCACACCC---------------------CGGUGCCCCACCGCUUGGCACGUGUAUGCGUCACGUCGCCUGGUUCA .....(((((....)))))....((((.....---------------------(((((...)))))...((((((((.......))))).)))))))... ( -24.30) >consensus UCGCCGCCUCCUUUGAGGUCCUUGCCACACCC_____________________CGGUGCCCCACCGCUUGGCACGUGUAUGCGUCACGUCGCCUGGUUCA .....(((((....)))))....((((..........................(((((...)))))...((((((((.......))))).)))))))... (-21.45 = -21.57 + 0.11)
Location | 11,712,846 – 11,712,944 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 80.95 |
Mean single sequence MFE | -21.90 |
Consensus MFE | -20.55 |
Energy contribution | -20.67 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -0.88 |
Structure conservation index | 0.94 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.910039 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11712846 98 + 23771897 GCCACACACCACCACCCCCUCCCCCCCCUGCGCUGCCCCACCGCUUGGCACGUGUAUGCGUCACGUCGCCUGGUUCAUCACCAGGACCUCCUGCCCAC ..........((((...............(((.((...)).)))..((((((((.......))))).))))))).......((((....))))..... ( -20.70) >DroSec_CAF1 26068 77 + 1 GCCACAACC---------------------CGGUGCCCCACCGCUUGGUACGUGUAUGCGUCACGUCGCCUGGUUCAUCACCAGGACCUCCUGCCCAA ((((.....---------------------(((((...)))))...((((((((.......))))).))))))).......((((....))))..... ( -21.40) >DroSim_CAF1 21998 77 + 1 GCCACACCC---------------------CGGUGCCCCACCGCUUGGCACGUGUAUGCGUCACGUCGCCUGGUUCAUCACCAGGACCUCCUGCCCAA ((((.....---------------------(((((...)))))..))))(((((.......)))))..((((((.....))))))............. ( -23.60) >consensus GCCACACCC_____________________CGGUGCCCCACCGCUUGGCACGUGUAUGCGUCACGUCGCCUGGUUCAUCACCAGGACCUCCUGCCCAA ((((..........................(((((...)))))...((((((((.......))))).))))))).......((((....))))..... (-20.55 = -20.67 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:23 2006