| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,180,912 – 1,181,021 |
| Length | 109 |
| Max. P | 0.798686 |
| Location | 1,180,912 – 1,181,021 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 72.56 |
| Mean single sequence MFE | -23.10 |
| Consensus MFE | -11.45 |
| Energy contribution | -12.23 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.798686 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1180912 109 + 23771897 CGGUUUUCAAAACUAGUAUUUGGUUUUCCACAACACAUCUAUUCG--UCAUAUCCUAUUUUGGGAGCCGGAUAGUCCUUCUUAACAUCCCUUCGUAGUUUCGGGCUAACCC .((((..(((((.(((....(((....)))....((........)--)......))))))))..))))((.((((((......((........))......)))))).)). ( -21.90) >DroSec_CAF1 5187 97 + 1 CGGUUUUCAAAACUAGUAUUUG--------------AUCUAUUUGAUUCAUAUCCUUUUUUGGGAACCGAAUAGUCCUUCUUAACAUCCCUUCGUAGUUUCGGGCUAACCC (((((..(((((..((.((.((--------------(((.....)).))).)).)).)))))..)))))..((((((......((........))......)))))).... ( -22.60) >DroEre_CAF1 6361 86 + 1 CGAUCUUCAAGUCAUG---------------------CCUA-ACG--UCAUG-CCUAUUUGGAGAUCCGAAUAGUCCUUUGGAACAUCCCUUCGUAGUUUCGGGCUAACCC .(((((((((((((((---------------------.(..-..)--.))))-...)))))))))))....((((((...(((((...........))))))))))).... ( -24.80) >consensus CGGUUUUCAAAACUAGUAUUUG______________AUCUAUUCG__UCAUAUCCUAUUUUGGGAACCGAAUAGUCCUUCUUAACAUCCCUUCGUAGUUUCGGGCUAACCC (((((((((((...............................................)))))))))))..((((((......((........))......)))))).... (-11.45 = -12.23 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:57 2006