| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,703,241 – 11,703,361 |
| Length | 120 |
| Max. P | 0.551966 |
| Location | 11,703,241 – 11,703,361 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.33 |
| Mean single sequence MFE | -35.40 |
| Consensus MFE | -24.68 |
| Energy contribution | -24.88 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.551966 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11703241 120 + 23771897 UAGCUAUCAGGAAACCUGCGAUGUGGUGGUUCCGCCCAUGCUGGAUAUUUUCCGUAAGCACUACAAAACUUUCUGUGGCCCCGAGAAAUCCGCAUUGGAUUUUGUAUACUGCAUUCUGAC ......((((((..((.((.(((.((((....))))))))).)).............(((.(((((((((...(((((...........)))))..)).)))))))...))).)))))). ( -31.40) >DroVir_CAF1 20440 120 + 1 CAGCUACGAAGAGACUUGUCAGUUUAUACUUAAACCCAUGCUGGACAUGUUUGACGAGCACUUUCAGGUAUUUUGUGGGGCUACCAAAUCUGCUCUGAAUUUCAUCUAUUGGAUUUUCAG .......((((((.((((((((((((....))))).((((.....))))..))))))))...((((((((.....(((.....)))....))).))))).((((.....))))))))).. ( -25.70) >DroSec_CAF1 16522 120 + 1 UAGCUAUCAGGAAACCUGCGAUGUGGUGGUUCCGCCCAUGCUGGACAUUUUCCGGAAGCACUACAAAACUUUCUGUGGCCCCGAGAAAUCCGCGUUGGAUUUUGUAUAUUGCAUCCUGAC ......((((((....((((((((((((.((((((....)).(((.....))))))).))))))....................(((((((.....)))))))....)))))))))))). ( -37.40) >DroSim_CAF1 11994 120 + 1 UAGCUAUCAGGAAACCUGCGAUGUGGUGGUUCCGCCCAUGCUGGACAUUUUCCGGAAGCACUACAAAACUUUCUGUGGCCCCGAGAAAUCCGCGUUGGAUUUUGUAUAUUGCAUCCUGAC ......((((((....((((((((((((.((((((....)).(((.....))))))).))))))....................(((((((.....)))))))....)))))))))))). ( -37.40) >DroEre_CAF1 12523 120 + 1 CAGCUACCAGGAAACCUGCAAUGUGGUGGUUCCGCCCAUGCUGGACAUUUUUCGGGAGCACUACAAAACUUUCUGCGGUAGCGAGAAAUCCGCAUUGGAUUUCGUAUACUGCAUCCUGAC .......(((((.........(((((((.(((((...(((.....)))....))))).)))))))........(((((((....(((((((.....)))))))...)))))))))))).. ( -42.40) >DroYak_CAF1 12537 120 + 1 UAGCUACCAGGAAACCUGCGAUGUGGUCGUCCCGCCUAUGCUGGACAUAUUCCGGAAGCACUACAAAACUUUCUGCGGUACCGAGAAAUCCGCAUUGGAUUUCGUAUACUGCAUCCUGAC .......(((((.........((((((.((((.((....)).))))......(....).))))))........(((((((....(((((((.....)))))))...)))))))))))).. ( -38.10) >consensus UAGCUACCAGGAAACCUGCGAUGUGGUGGUUCCGCCCAUGCUGGACAUUUUCCGGAAGCACUACAAAACUUUCUGUGGCCCCGAGAAAUCCGCAUUGGAUUUCGUAUACUGCAUCCUGAC .......(((((.........(((((((.(((((...(((.....)))....))))).)))))))........(((((......(((((((.....))))))).....)))))))))).. (-24.68 = -24.88 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:18 2006