Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 11,702,444 – 11,702,564 |
Length | 120 |
Max. P | 0.971719 |
Location | 11,702,444 – 11,702,564 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.88 |
Mean single sequence MFE | -41.98 |
Consensus MFE | -29.25 |
Energy contribution | -33.45 |
Covariance contribution | 4.20 |
Combinations/Pair | 1.13 |
Mean z-score | -2.64 |
Structure conservation index | 0.70 |
SVM decision value | 1.68 |
SVM RNA-class probability | 0.971719 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11702444 120 - 23771897 GGAAGCACUGGCCCACAAACUGGUGUGACACCUUCACAAUCCAGUUAUCCGGGUCAGAGGUCACGGCCUGCAGAAAAGCAAUGGCGAAUUCCCUGGCCACUGUCUACAUUCCACAUUACG ((((((.(((((((...(((((((((((.....)))))..))))))....)))))))((((....))))))......(((.((((.(......).)))).))).....))))........ ( -42.70) >DroSec_CAF1 15828 120 - 1 GGAAGCACUGGCCCACAAACUGGUGUGACACCUUCACAAUCCAGUUAUCUGGGUCAGAGGUCACGGCCUGCAGAAAGGCAAUGGCGAAUUCCCUGGCCACUGUCUAUAUUCCACAUUUAG ((((((.((((((((..(((((((((((.....)))))..))))))...))))))))((((....))))))....(((((.((((.(......).)))).)))))...))))........ ( -48.70) >DroSim_CAF1 11287 120 - 1 GGAAGCACUGGCCCACAAACUGGUGUGACACCUUCACAAUCCAGUUAUCUGGGUCAGAGGUUACGGCCUGCAGAAAGGCAAUGGCGAAUUCCCUGGCCACUGUCUAUAUUCCACAUUUAG ((((((.((((((((..(((((((((((.....)))))..))))))...))))))))((((....))))))....(((((.((((.(......).)))).)))))...))))........ ( -47.60) >DroEre_CAF1 11661 119 - 1 GGAAGCACUGGCCCACAAACUGGUGGGACACCUUCACAAUCCAGUUAUCCGGGUCAGAGGUCACGGCCUGCAGAAAGGCAAUGGCGAAUUCUCUGGCCACUGUCUGGAUACCACUU-UAG .((((...((.(((((......))))).)).))))...((((((.......((((((((((((..((((......))))..)))).....)))))))).....)))))).......-... ( -44.00) >DroYak_CAF1 11747 119 - 1 GGAAGCACUGGCCCACAAACUGGUGUGACACCUUCGCAAUCCAGUUAUCCGGGUCAGAGGUCACGGCCUGCAGAAAGGCAAUGGCGAAUUCGUUGGCCACCGUCUGAAUUCCACGU-UAG ((((((.(((((((...(((((((((((.....)))))..))))))....)))))))((((....))))))....((((..((((.((....)).))))..))))...))))....-... ( -44.80) >DroMoj_CAF1 16124 99 - 1 UGAAGCAUUGACCGACAAAGUUAUGCGACACUUCGUUUAGCCAAUUUUUUGGAUCGUUGGCAACAGCCUGCAUGAACGCGAACAUGUACUCCG---------------------AUGUGG ....((((((....(((..(((.((((....(((((.(((((((....))))...((((....))))))).)))))))))))).)))....))---------------------)))).. ( -24.10) >consensus GGAAGCACUGGCCCACAAACUGGUGUGACACCUUCACAAUCCAGUUAUCCGGGUCAGAGGUCACGGCCUGCAGAAAGGCAAUGGCGAAUUCCCUGGCCACUGUCUAUAUUCCACAUUUAG ((((((.(((((((...(((((((((((.....)))))..))))))....)))))))((((....))))))....(((((.((((.(......).)))).)))))...))))........ (-29.25 = -33.45 + 4.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:17 2006