| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,677,539 – 11,677,629 |
| Length | 90 |
| Max. P | 0.849638 |
| Location | 11,677,539 – 11,677,629 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 69.10 |
| Mean single sequence MFE | -25.13 |
| Consensus MFE | -12.80 |
| Energy contribution | -13.46 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.849638 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11677539 90 + 23771897 UACCACCAUCUCCGUGUCCCCGUUUCUUCGGAUCCC-------CGGCGCAGAUGGAGAUGGUAAACUCU--CGGCCCUGCCCA-CAGCCAUCAUCCAUC---C ....(((((((((((.(.((((..((....))....-------))).).).))))))))))).......--.(((........-..)))..........---. ( -28.50) >DroSec_CAF1 2825 76 + 1 UUCUUCCAACU----------------GCGGAUCCC-------CGGCGCAGAUGGAGAUGGAAAACUCCGGCGGCCCUGCCCA-CAGCCAUCAUCCAUC---C ....((((.((----------------(((......-------...))))).))))((((((.......((((((...)))..-..)))....))))))---. ( -23.80) >DroYak_CAF1 3004 92 + 1 UUCCUCCUUCUCCGAA--------UCCGCAGAUACCUCCUCUCUGGCGCAGAUGGAGAUGGAAAACUCC---GGCCCUGCCCACCAGCCAUCAUCCAGGCAAC ....(((.((((((..--------(.((((((.........))).))).)..)))))).))).......---(((...))).....(((........)))... ( -23.10) >consensus UUCCUCCAUCUCCG__________UC_GCGGAUCCC_______CGGCGCAGAUGGAGAUGGAAAACUCC__CGGCCCUGCCCA_CAGCCAUCAUCCAUC___C ..................................................(((((((((((...........(((...)))......))))).)))))).... (-12.80 = -13.46 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:11 2006