| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,661,547 – 11,661,645 |
| Length | 98 |
| Max. P | 0.647924 |
| Location | 11,661,547 – 11,661,645 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 82.23 |
| Mean single sequence MFE | -28.26 |
| Consensus MFE | -20.43 |
| Energy contribution | -20.82 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.647924 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11661547 98 - 23771897 AUAUAACGCAGCGCACCGAGAGAAACAUCUGACCCACAUCUUUCAAAAUAUUGGACGACAAAUGUGUUGGCGUGUGCUGUAAUUUGGAGUACGGAAA-C- .......((((((((((((((((...............))))))...........(((((....)))))).)))))))))..((((.....))))..-.- ( -23.66) >DroVir_CAF1 38077 93 - 1 AGACGACGCAGCGCACCGAUAGAAACAUUUGGCCCACAUCCUUAAGUAUGUUGGCCGACAUGUGAGUCUGUGUGUGCUGUGCAC-----GAGAAAAA-C- ...((.((((((((((..(((((.((((((((((.((((.(....).)))).)))))).))))...)))))))))))))))..)-----).......-.- ( -37.80) >DroSec_CAF1 35767 98 - 1 AGAUAACGCAGCGCACCGAGAGGAACAUUUGACCCACAUCUUUCAAUAUGUUGGAGGACAAAUGUGUUGGCGUGUGCUGUAAUUUGGAGUACGGAAA-C- .......((((((((((.((....(((((((.......((((((((....))))))))))))))).)).).)))))))))..((((.....))))..-.- ( -28.11) >DroSim_CAF1 36711 98 - 1 AGAUAACGCAGCGCACCGAGAGGAACAUCUGACCCACAUCUUUCAAUAUGUUGGAGGACAAAUGUGUUGGCGUGUGCUGUAAUUUGGAGUACGGAAA-C- .......(((((((((..(((......)))(.((((((((((((((....))))))))....))))..))))))))))))..((((.....))))..-.- ( -26.20) >DroEre_CAF1 34935 90 - 1 AGACGACGCAGCGCACCGAGAGGAACAUCUGACCCACAUCCUUUAAUAUGUUGGAGGACAAAUGUGUUGGUGUGUGCUGCAAUUUGGAUU---------- .......(((((((.((....)).(((((.....((((((((((((....))))))))....))))..))))))))))))..........---------- ( -30.50) >DroYak_CAF1 36923 100 - 1 AGACAACGCAGCGCACCGAGAGGAACAUCUGACCCACAUCCUUCAAAAUGUUGGACGACAAAUGUGUUGGCGUGUGCUGUAAUUUGGAUUGAGAAAAACU ...(((.((((((((((.(((......)))..((.((((........)))).)).(((((....)))))).)))))))))...))).............. ( -23.30) >consensus AGACAACGCAGCGCACCGAGAGGAACAUCUGACCCACAUCCUUCAAUAUGUUGGACGACAAAUGUGUUGGCGUGUGCUGUAAUUUGGAGUACGGAAA_C_ .......((((((((((.((....((((.((.((.((((........)))).))....)).)))).)).).))))))))).................... (-20.43 = -20.82 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:08 2006