Locus 400

Sequence ID 3L_DroMel_CAF1
Location 1,176,653 – 1,176,752
Length 99
Max. P 0.771432
window586

overview

Window 6

Location 1,176,653 – 1,176,752
Length 99
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 94.16
Mean single sequence MFE -36.10
Consensus MFE -30.63
Energy contribution -31.38
Covariance contribution 0.75
Combinations/Pair 1.07
Mean z-score -1.84
Structure conservation index 0.85
SVM decision value 0.53
SVM RNA-class probability 0.771432
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1176653 99 + 23771897
CGAUUUCCGCGGGCACACGCGUCGUAUGCGCAACUCAGCGCCAACUGCAAGAUCCUUCGGAUGCGAAAGUC-CUUUUAUAGGCAGCCCGCAGGACUCGCA
(((.(((.((((((...(((((((((.((((......))))....)))..((....)).))))))...(.(-((.....)))).)))))).))).))).. ( -37.40)
>DroSec_CAF1 809 99 + 1
CGAUUUCCGCGGGCACACGCGUCGUAUGCGCAACUCAGCGCCAACUGCAAGAUCCCUCGGAUGCGAAAGUC-CUUUUAUAGGCAGCCCGCAGGACUCGCA
(((.(((.((((((...(((((((((.((((......))))....)))..((....)).))))))...(.(-((.....)))).)))))).))).))).. ( -36.60)
>DroSim_CAF1 800 99 + 1
CGAUUUCCGCGGGCACACGCGUCGUAUGCGCAACUCAGCGCCAACUGCAAGAUCCCUCGGAUGCGAAAGUC-CUUUUAUAGGCAGCCCGCAGGACUCGCA
(((.(((.((((((...(((((((((.((((......))))....)))..((....)).))))))...(.(-((.....)))).)))))).))).))).. ( -36.60)
>DroEre_CAF1 833 99 + 1
CGAUUUCCGCGGGCACACGCGUCGUAUGCGCAACUCAGCGCCAACUGCAAGAUCCUUCGGAUGCGAAAGUC-CUUUUAUAGGCAGCCCGCAGGACUCGCA
(((.(((.((((((...(((((((((.((((......))))....)))..((....)).))))))...(.(-((.....)))).)))))).))).))).. ( -37.40)
>DroYak_CAF1 878 99 + 1
CGAUUUCCGCGGGCACACGCGUCGUAUGCGCAACUCAGCGCCAACUGCAAGAUCCUUCGGAUGCGAGAGUC-CUUUUAUAGGCAGCCCGCAGGACUCGCA
(((.(((.((((((...(((((((((.((((......))))....)))..((....)).))))))...(.(-((.....)))).)))))).))).))).. ( -37.40)
>DroAna_CAF1 907 100 + 1
UGUUCUUCGCGGGCACACGCGUCGUAUGCGCAACUCAGCGCCAACUGCAAGAUCCUGCCGUGGCGACAGCCCCUUUUAUAGCCAGCCCGCAGCACCCACA
........((((((....((((.....))))......((((((...(((......)))..))))).).................)))))).......... ( -31.20)
>consensus
CGAUUUCCGCGGGCACACGCGUCGUAUGCGCAACUCAGCGCCAACUGCAAGAUCCUUCGGAUGCGAAAGUC_CUUUUAUAGGCAGCCCGCAGGACUCGCA
(((.(((.((((((...(((((((((.((((......))))....)))..((....)).))))))...(((.........))).)))))).))).))).. (-30.63 = -31.38 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:56 2006