Locus 40

Sequence ID 3L_DroMel_CAF1
Location 171,210 – 171,330
Length 120
Max. P 0.552289
window48

overview

Window 8

Location 171,210 – 171,330
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 94.86
Mean single sequence MFE -23.52
Consensus MFE -21.69
Energy contribution -22.25
Covariance contribution 0.56
Combinations/Pair 1.03
Mean z-score -1.42
Structure conservation index 0.92
SVM decision value 0.04
SVM RNA-class probability 0.552289
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 171210 120 - 23771897
AGAAAAACAAAAAUUGAAUAACUAAAUUCCCUAUCAUUUCCGAAAGGGAAUUGUUUGUAUUUUAGCGUUUAAGAAUGCAACGUAUCGAAGAACUCCAGAGGAAAGUUAAUGAUUGUUUUG
...(((((((..(((((....((.((((((((.((......)).))))))))..(((((((((........)))))))))..................)).....)))))..))))))). ( -24.50)
>DroSec_CAF1 4920 120 - 1
AGAAAAACAAAAAUUGAAUAACAAAAUUCCCUAUCAUUUCCGAAAGGGACUUGUUUGUAUUUUAGCGUUUAAGAAUGCAACGUAUCGAAGAACUCCAGAGAAAAGUUAAUGAUUGUUUUG
...(((((((..(((((...(((((..(((((.((......)).)))))....)))))......(((((....)))))...........................)))))..))))))). ( -22.00)
>DroSim_CAF1 5098 120 - 1
AGAAAAACAAAAAUUGAAUAACAAAAUUCCCUAUCAUUUCCGAAAGGGAAUUGUUUGUAUUUUAGCGUUUAAGAAUGCAACGUAUCGAAGAACUCCAGAGAAAAGUUAAUGAUUGUUUUG
...(((((((..(((((.......((((((((.((......)).))))))))..(((((((((........))))))))).........................)))))..))))))). ( -23.70)
>DroYak_CAF1 5131 120 - 1
AGAGAAACAAAAAUUUAACAACAAAAUUCCCUAUCAUUUUCGAAAGGGAAUUCUUUGUAUUUUAGCGUGUAAGAAUGCAACGUAUCGAAAAACUCCAGAGGAAAGAUAAUGUUUGUUUUG
...((((((((...(((.(.......((((((.((......)).))))))(((((((..((((.(((((((....))).))))....))))....)))))))..).)))..)))))))). ( -23.90)
>consensus
AGAAAAACAAAAAUUGAAUAACAAAAUUCCCUAUCAUUUCCGAAAGGGAAUUGUUUGUAUUUUAGCGUUUAAGAAUGCAACGUAUCGAAGAACUCCAGAGAAAAGUUAAUGAUUGUUUUG
...(((((((..(((((.......((((((((.((......)).))))))))..(((((((((........))))))))).........................)))))..))))))). (-21.69 = -22.25 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:31 2006