Locus 3998

Sequence ID 3L_DroMel_CAF1
Location 11,650,210 – 11,650,302
Length 92
Max. P 0.968155
window6231

overview

Window 1

Location 11,650,210 – 11,650,302
Length 92
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 74.90
Mean single sequence MFE -36.60
Consensus MFE -20.98
Energy contribution -21.26
Covariance contribution 0.28
Combinations/Pair 1.28
Mean z-score -2.13
Structure conservation index 0.57
SVM decision value 1.62
SVM RNA-class probability 0.968155
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11650210 92 + 23771897
CCUU-UUGAGUCGCGAUUACGGACCGGAAGUACCUGGUCCCGCGACUUUAGGGCAGAGCCACUGAUUUUAAGGG-GCCUGGAGAAUUCAGUAAU-----------
(((.-..((((((((.....(((((((......))))))))))))))).))).(((.(((.((.......)).)-)))))..............----------- ( -36.10)
>DroSec_CAF1 24632 92 + 1
CCUU-UUGAGUCGCGAUUACGGACCGGAAGUACCUGGUCCCGCGACUUUUGGGCAGAGCCACUGGUCCCAAGGG-GCUUGGCGGAUUUACUAAU-----------
(((.-..((((((((.....(((((((......)))))))))))))))..)))....((((..(((((....))-)))))))............----------- ( -40.10)
>DroSim_CAF1 25595 92 + 1
CCUU-UUGAGGCGCGAUUACGGACCGGAAGUGCCUGGUCCCGCGACUUUUGGGCAGAGCCACUGGUCCCAAGGG-GCUUGGCGGAUUCACUAAU-----------
(((.-..((((((((.....(((((((......))))))))))).)))).)))....((((..(((((....))-)))))))............----------- ( -35.30)
>DroEre_CAF1 22615 92 + 1
CCUU-CUGAGUCGCGAUUACGGACCGGAAGUACCAGGUCCCGCGACUUUUGGGCGGAGCCACUGGUCCUUGGGG-GCUUGGAGGCUCCACUAAU-----------
(((.-..((((((((.....(((((((.....)).)))))))))))))..))).((((((.(.(((((....))-))).)..))))))......----------- ( -44.50)
>DroAna_CAF1 20950 96 + 1
GCUUUUUGGUUUGCAAUUUUAGUCCGGAAGUUGUAAGUCCUGCGAAUGUUGGGCGGAGCCAUUGGUCCUUGGGGUGCUUGU---------UACUCAAAGGUUCCC
......((((((((((((((......))))))))..((((.((....)).)))).))))))..((.((((.(((((.....---------))))).))))..)). ( -27.00)
>consensus
CCUU_UUGAGUCGCGAUUACGGACCGGAAGUACCUGGUCCCGCGACUUUUGGGCAGAGCCACUGGUCCUAAGGG_GCUUGGAGGAUUCACUAAU___________
(((....((((((((.....(((((((......)))))))))))))))..)))..(((((.((.......)).).)))).......................... (-20.98 = -21.26 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:03 2006