Locus 3997

Sequence ID 3L_DroMel_CAF1
Location 11,647,569 – 11,647,664
Length 95
Max. P 0.889472
window6230

overview

Window 0

Location 11,647,569 – 11,647,664
Length 95
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 73.54
Mean single sequence MFE -31.30
Consensus MFE -12.63
Energy contribution -15.32
Covariance contribution 2.69
Combinations/Pair 1.09
Mean z-score -2.80
Structure conservation index 0.40
SVM decision value 0.96
SVM RNA-class probability 0.889472
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11647569 95 - 23771897
CCCCAAAGGGCAUCCCA-----UUCCAGGGCAACUGCUCCCAGCUCUGCAGCAUCUCUCCCUUUUCGGGGCCCAGCUGGUUUUCAUUUGGCCCCACAUCC
....((((((...(((.-----.....)))...((((..........)))).......))))))..((((((.((.((.....)).))))))))...... ( -27.00)
>DroSec_CAF1 22011 94 - 1
CCCCAAAGGGCAUCCCA-----UCCCGGGGCAAGUGCUCCCAGCUCUGCAGCAUCUCUG-CUUUUUGGUGCUCAGCUGGCGUUCAUUUGGCCCCACAUCC
.......(((.......-----.)))((((((((((..(((((((..(((.((......-.....)).)))..)))))).)..))))).)))))...... ( -36.10)
>DroSim_CAF1 22932 94 - 1
CCCCAAAGGGCAUCCCA-----UCCCAGGGCAACUGCUCCCAGCUCUGCAGCAUCUCUG-CUUUUCGGUGCUCAGCUGGCUUUCAUUUGGACCCACAUCC
..((((((((((.(((.-----.....)))....)))))((((((..(.((((((....-......)))))))))))))......))))).......... ( -27.80)
>DroAna_CAF1 18288 89 - 1
CCCUAAAGGCCAUCCCUGGGCAUCCCAGGGUGUUUG------GAUCUGGGG--ACUCAG-CUGUCCCAUG--CAAACGACUUUCAUUUGGCUUAAUGUCU
......((((((.(((((((...)))))))((((((------.((...(((--((....-..))))))).--)))))).........))))))....... ( -34.30)
>consensus
CCCCAAAGGGCAUCCCA_____UCCCAGGGCAACUGCUCCCAGCUCUGCAGCAUCUCUG_CUUUUCGGUGCUCAGCUGGCUUUCAUUUGGCCCCACAUCC
..((((((((((.(((...........)))....)))))((((((..(((.(..............).)))..))))))......))))).......... (-12.63 = -15.32 +   2.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:02 2006