Locus 3993

Sequence ID 3L_DroMel_CAF1
Location 11,631,747 – 11,631,839
Length 92
Max. P 0.806728
window6224

overview

Window 4

Location 11,631,747 – 11,631,839
Length 92
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 74.95
Mean single sequence MFE -16.13
Consensus MFE -9.21
Energy contribution -10.29
Covariance contribution 1.08
Combinations/Pair 1.06
Mean z-score -1.69
Structure conservation index 0.57
SVM decision value 0.63
SVM RNA-class probability 0.806728
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11631747 92 - 23771897
UUACAAGUUGUUUGCCUGACAUGUUUGUGCGCCUCGUCCAUUCU--------------CCGUUCCGUGCUCCAUUCCCCACAUCCAUGUCCUUCUAUUGACACUUG
...(((((.(((.....((((((..(((((((..((........--------------.))....))))..........)))..))))))........)))))))) ( -16.32)
>DroSec_CAF1 6556 80 - 1
UUACAAGUUGUUUGCCUGACAUGUUUGUGUGCCACGUCCCUUCU--------------CCA------------UUCCGCACAUCCAUGUCCUUCUAUUGACACUUG
...(((((.(((.....((((((..((((((.............--------------...------------...))))))..))))))........)))))))) ( -19.23)
>DroSim_CAF1 6770 92 - 1
UUACAAGUUGUUUGCCUGACAUGUUUGUGUGCCACGUCCCUUCU--------------CCAUUCCGUGCUCCAUUCCGCACAUCCAUGUCCUUCUAUUGACACUUG
...(((((.(((.....((((((..((((((.((((........--------------......))))........))))))..))))))........)))))))) ( -21.16)
>DroEre_CAF1 4887 91 - 1
UUACAAGUUGCUUGCCUGACAUGUUUGGAUUCCACGUCC-UUCU--------------CCACUCCGCACUCCAUGCCCCACGUCCAUGUCCUUCUAUUGACACUUG
...(((((..(......((((((...((((.....))))-....--------------.......(((.....)))........))))))........)..))))) ( -13.04)
>DroYak_CAF1 7020 105 - 1
UUACAAGUUGUUAGCCUGACAUGUUUGGGUUCCACGUCC-UUCUCUAUUCUCCAUCCUCCAUUCCGCACUCCAUUCCCCACGUCCAUGUCCUUCUAUUGACACUUG
...(((((.(((((...((((((..((((..........-....................................))))....))))))......)))))))))) ( -14.35)
>DroAna_CAF1 4957 77 - 1
UUACAAGUUGUUUGCCUGACAUGUUUAUGUUACCCACCCAUCCC--------------AGG---------------AGCAGGAUCUCAUCCCUCUAUUGACACUUG
...(((((.(((((..((((((....))))))..))........--------------.((---------------((..((((...))))))))...)))))))) ( -12.70)
>consensus
UUACAAGUUGUUUGCCUGACAUGUUUGUGUGCCACGUCC_UUCU______________CCAUUCCG__CUCCAUUCCCCACAUCCAUGUCCUUCUAUUGACACUUG
...(((((.(((.....((((((..((((.................................................))))..))))))........)))))))) ( -9.21 = -10.29 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:57 2006