Locus 3991

Sequence ID 3L_DroMel_CAF1
Location 11,627,157 – 11,627,266
Length 109
Max. P 0.817984
window6221

overview

Window 1

Location 11,627,157 – 11,627,266
Length 109
Sequences 4
Columns 110
Reading direction reverse
Mean pairwise identity 84.78
Mean single sequence MFE -26.70
Consensus MFE -19.05
Energy contribution -20.92
Covariance contribution 1.87
Combinations/Pair 1.14
Mean z-score -1.95
Structure conservation index 0.71
SVM decision value 0.67
SVM RNA-class probability 0.817984
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11627157 109 - 23771897
AAAUAA-UUUGUAUUAGUAAUUCCGAAAGAAUCUGCGAUACAAACUUGAUUCUGUUCGAUUUCGCCAUGUAGUUGCUUCGCACAUUCUUCGGGACUAAUUAGCUCAACGU
......-.(((..(((((..(((((((.((((.(((((....((((......((..((....)).))...))))...))))).)))))))))))...)))))..)))... ( -22.70)
>DroSec_CAF1 2085 110 - 1
AAAUAAGUUUGGGUUAGUAUUUCCGGUAGAAUCAGCGACACAAACUUGAUUCUGUUCGAUUUCUGAAUUAAUUUGUUUUGCACAUUCUUCGUGACUAAUUAGCUCAACAG
......(((.((((((((...(((((.(((((..((((.(((((.(((((((.(........).)))))))))))).))))..)))))))).))...))))))))))).. ( -28.00)
>DroSim_CAF1 2219 109 - 1
AAAUAA-UUUGGGUUAGUCUUUCCGGUAGAAUCAGCGACACAAACUUGAUUCUGUUCGAUUUCUGCAUUAAUUUGUUUUACACAUUCACCGUGACUAAUUAGCUCAACAG
......-.((((((((((...((((((((((((((..........))))))))...........(((......)))...........)))).))...))))))))))... ( -21.30)
>DroYak_CAF1 2240 109 - 1
AACUCA-UUUGGGUUAAUAAUUCCGGUAGAAUGUGCGACACAAAGUUGAUUCUGUUCGAUUGUCCCAUGAAUUUGUUUUGCACAUUCCUCGGGACUAAUUAGCUCAACGG
......-.((((((((((.(.(((.(..((((((((((.((((((((((......)))))).((....))..)))).))))))))))..).))).).))))))))))... ( -34.80)
>consensus
AAAUAA_UUUGGGUUAGUAAUUCCGGUAGAAUCAGCGACACAAACUUGAUUCUGUUCGAUUUCUCCAUGAAUUUGUUUUGCACAUUCUUCGGGACUAAUUAGCUCAACAG
........((((((((((..(((((((.((((.(((((.(((((.((((......))))............))))).))))).)))))))))))...))))))))))... (-19.05 = -20.92 +   1.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:54 2006