Locus 399

Sequence ID 3L_DroMel_CAF1
Location 1,175,057 – 1,175,149
Length 92
Max. P 0.795556
window585

overview

Window 5

Location 1,175,057 – 1,175,149
Length 92
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 82.66
Mean single sequence MFE -28.93
Consensus MFE -24.10
Energy contribution -24.63
Covariance contribution 0.53
Combinations/Pair 1.05
Mean z-score -1.80
Structure conservation index 0.83
SVM decision value 0.60
SVM RNA-class probability 0.795556
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1175057 92 + 23771897
GAAAACUGGGCAAAACUGGAGUUGGCCAGCAGGGGCAUGUGGCCCAGUAGCUCGUGGCAACAGUCCCUGGAAAUG------CGAAUAAAACGCAGAUG
.....((((.(((........))).))))(((((((.(((.((((........).))).))))))))))....((------((.......)))).... ( -31.80)
>DroVir_CAF1 97917 88 + 1
GAGAACUGGGCAAAGCUCGAGUUGGCCAACAGCGGCAUGUGGCCCAAAAGUUCGUGACAGCAAUCACUGGAAUUUGUAACACAAUUAA----------
..(((((((((...((....((((.....)))).....)).))))...)))))(((...((((..........))))..)))......---------- ( -21.40)
>DroSec_CAF1 58906 92 + 1
GAAAACUGGGCAAAACUGGAGUUGGCCAGCAGGGGCAUGUGGCCCAGUAGCUCGUGGCAACAGUCCCUGGAAAUG------CGAAUAAAACGCAGGUG
.....((((.(((........))).))))(((((((.(((.((((........).))).))))))))))....((------((.......)))).... ( -31.80)
>DroSim_CAF1 57412 92 + 1
GAAAACUGGGCAAAACUGGAGUUGGCCAGCAGGGGCAUGUGGCCCAGUAGCUCGUGGCAACAGUCCCUGGAAAUG------CGAAUAAAACGCAGGUG
.....((((.(((........))).))))(((((((.(((.((((........).))).))))))))))....((------((.......)))).... ( -31.80)
>DroEre_CAF1 57193 80 + 1
GAAAACUGGGCAAAGCUGGAGUUGGCCAGCAGGGGCAUGUGGCCCAGCAGCUCGUGGCAACAGUCCCUGGAAAUG------CAAAU------------
.........(((..(((((......)))))((((((.(((.((((........).))).))))))))).....))------)....------------ ( -28.70)
>DroYak_CAF1 61280 79 + 1
GAGAACUGGGCAAAACUGGAGUUGGCCAGCAGGGGCAUGUGGCCCAGCAGCUCGUGGCAACAGUCCCUGGA-AUG------CAAAU------------
.....((((.(((........))).))))(((((((.(((.((((........).))).))))))))))..-...------.....------------ ( -28.10)
>consensus
GAAAACUGGGCAAAACUGGAGUUGGCCAGCAGGGGCAUGUGGCCCAGUAGCUCGUGGCAACAGUCCCUGGAAAUG______CAAAUAA__________
.....((((.(((........))).))))(((((((.(((.((((........).))).))))))))))............................. (-24.10 = -24.63 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:55 2006