Locus 3989

Sequence ID	3L_DroMel_CAF1
Location	11,622,543 – 11,622,658
Length	115
Max. P	0.732311

overview

Window 4

Location	11,622,543 – 11,622,658
Length	115
Sequences	4
Columns	115
Reading direction	reverse
Mean pairwise identity	64.28
Mean single sequence MFE	-22.87
Consensus MFE	-13.14
Energy contribution	-13.33
Covariance contribution	0.19
Combinations/Pair	1.23
Mean z-score	-1.22
Structure conservation index	0.57
SVM decision value	0.43
SVM RNA-class probability	0.732311
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11622543 115 - 23771897
UAUGAAUUUAUAUUGCUAAGUUAGGGUACUCCCGAACUAACCAUUCGGUCAGCUGUUAAGCUAGCUGAUUGCCAAAGCCAACAAUUGAAUUUCUUUAAAUUUUAUUUCAGUUGCA
..............(((.((((.(((....))).))))...((.((((..((((....))))..)))).))....)))...((((((((................)))))))).. ( -26.59)
>DroSec_CAF1 8545 108 - 1
UAUGAAUUUAUAGCGU----AUAGGGUACUCCCGAACUAACUUAUCGGUCAGCUGUACAGCCAGCUGAUUGCCAGUGCUA---AUUGAAUUUCGUUAACUUUUUAUUUAGUUGUU
.(((((((((((((..----...(((....)))......(((...((((((((((......))))))))))..)))))))---..)))).)))))(((((........))))).. ( -27.50)
>DroSim_CAF1 5904 88 - 1
UAUGAAUUUACAGCGU----AUAGGGUACUCCCGAACUAACUUAUCGGUCAGCUGUUCAGCCAGCUGAUUGCCAGUGCUA---AUUGAA--------------------GUGGGU
................----...(((....)))..(((.((((..((((((((((......)))))))))).((((....---))))))--------------------)).))) ( -22.90)
>DroEre_CAF1 8424 102 - 1
UAGGAAUUUUUUC-UCUUAGCUAGGGUACUCCCGUGCUAACAUUUCAGUCAG------------UUUAUUUCCAACGCCAAUAAUUGAAUUUAUUAAAAUUAGUAUUCAGUAUUA
..((((.......-...((((..(((....)))..))))((......))...------------.....))))..........((((((((((.......))).))))))).... ( -14.50)
>consensus
UAUGAAUUUAUAGCGC____AUAGGGUACUCCCGAACUAACUUAUCGGUCAGCUGUUCAGCCAGCUGAUUGCCAAUGCCA___AUUGAAUUUCUUUAAAUUUUUAUUCAGUUGUA
.......................(((....)))............((((((((((......))))))))))............................................ (-13.14 = -13.33 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:47 2006