| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,604,389 – 11,604,481 |
| Length | 92 |
| Max. P | 0.514635 |
| Location | 11,604,389 – 11,604,481 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 76.98 |
| Mean single sequence MFE | -22.61 |
| Consensus MFE | -18.81 |
| Energy contribution | -18.70 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.20 |
| Mean z-score | -0.67 |
| Structure conservation index | 0.83 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.514635 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11604389 92 + 23771897 UCAUCUCGAUCUAU--AUAUUUGCAGACACAGUGGGAU---AGCCAGAACAUGGCUAGAAAGGCGCAAUGCUGCCAGUUAUCGUAGUAGC------AACCA---------GU .......(..((((--..(((.((((.((..(((...(---(((((.....))))))......)))..)))))).)))....))))...)------.....---------.. ( -19.10) >DroVir_CAF1 105045 89 + 1 UCAU------CUAU--AUAUUUGCAGACGCAUUGGGAG---GGCCCGAGCAUGGCUAGAAAGGCGCAAUGCUGCCAGAUAUCAUAGUAGC------------CAUAGGCUAU ....------((((--((((((((((.(((.(((((..---..))))))).(((((.....))).))..)))).))))))).))))((((------------(...))))). ( -26.70) >DroWil_CAF1 89186 86 + 1 UCAU------CUAU--AUAUUUGCAGACACAUUGGGAUAACAGCCAGACAAUGGCUAGAAAGGCGCAAUGCUGUCAGAUAUCAUAGUAGC------AAAU------------ ....------((((--((((((((((...(((((.(.....(((((.....))))).......).)))))))).))))))).))))....------....------------ ( -21.80) >DroMoj_CAF1 92328 97 + 1 UCAU------CUAUCUAUAUUUGCAGACUCAUUGGGAG---GGCCAGAGCAUGGCAAGAAAGGCGCAAUGCUGCCAGAUAUCAUAGUAGC------UAUAUGCAUAGGCUAU ....------((((..((((((((((...(((((.(..---.((((.....))))........).)))))))).))))))).))))((((------(.........))))). ( -22.20) >DroAna_CAF1 108920 92 + 1 UCAU------CUAU--AUAUUUGCAGACACAUUGGGAG---GGCCAGAACAUGGCUAGAAGGGCACAAUGCUGCGGGAUAUCAUAGUAGCAGCAGCAGCCA---------GU ...(------((..--...(((.(((.....))).)))---(((((.....))))))))..(((....((((((..............))))))...))).---------.. ( -22.84) >DroPer_CAF1 94753 86 + 1 UCAU------CUAU--AUAUUUGCAGACACAUUGGGAG---GGCCAGAGCAUGGCUAGAAAGGCGCAGUGCUGUCAGAUAUCGUAGUGGC------ACUCA---------GU (((.------((((--((((((((((...(((((.(..---(((((.....))))).......).)))))))).))))))).))))))).------.....---------.. ( -23.00) >consensus UCAU______CUAU__AUAUUUGCAGACACAUUGGGAG___GGCCAGAGCAUGGCUAGAAAGGCGCAAUGCUGCCAGAUAUCAUAGUAGC______AACCA_________GU ..........((((..((((((((((...(((((.(.....(((((.....))))).......).))))))))).))))))....))))....................... (-18.81 = -18.70 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:41 2006