Locus 3985

Sequence ID 3L_DroMel_CAF1
Location 11,596,041 – 11,596,153
Length 112
Max. P 0.943323
window6206

overview

Window 6

Location 11,596,041 – 11,596,153
Length 112
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 74.69
Mean single sequence MFE -34.38
Consensus MFE -23.30
Energy contribution -22.13
Covariance contribution -1.16
Combinations/Pair 1.36
Mean z-score -1.65
Structure conservation index 0.68
SVM decision value 1.33
SVM RNA-class probability 0.943323
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11596041 112 + 23771897
GUAUACAUAGGCACAGUCAAUGUGCCUGUAUCCGGCAUCAAUGGCAACUUUGACAGCCUCGGUGACCUGACCCUUGGGGCUCUGGAAGCAA----AUUAGCAAC---AUAUGGUGUUAA
..(((((((((((((.....))))))))).(((((..((((.(....).)))).(((((((((......)))...))))))))))).((..----....))...---.....))))... ( -35.60)
>DroPse_CAF1 79406 107 + 1
GUAGACGUGGGCACAGUCAAUGUGCCGGUACCCAGCGUCAAUGGCCACUUUCACAGCUUCAGUCACCUGACCUUUGGGGCUCUAAAAA---------GAGGAAC---AUAUAGUUGGCA
...(((((.((((((.....))))))((...)).)))))....(((.((((...((((((((((....)))...)))))))....)))---------)...(((---.....)))))). ( -32.50)
>DroEre_CAF1 80285 109 + 1
GUACACAUAGGCACAGUCAAUGUGCCUGUAUCCGGCAUCAAUGGCCACUUUUACAGCCUCGGUGACUUGACCCUUGGGGCUCUGGAAGCAG----AGUAGCAAC---AUGUG---UUAG
..(((((((((((((.....)))))))))....(((.......)))....((((.((((((((......)))...)))))((((....)))----)))))....---..)))---)... ( -36.00)
>DroWil_CAF1 77716 118 + 1
GUAGACAUGGGCACAAUCGAUGUGCCUAUAACCAGCGUCGAUGGCAACUUUGACAGCCUCCGUGACUUGACCUUGAGGGCUCUGAAAGUAACAGAAUGAGAAAUAAGACA-AGUUCGCA
......(((((((((.....))))))))).....(((((((.(....).))))).))....((((((((.((....))..((((.......)))).............))-)).)))). ( -33.20)
>DroYak_CAF1 94746 101 + 1
GUAUACAUAGGCACAGUCAAUGUGCCUGUAUCCGGCAUCGAUGGCCACUUUCACAGCCUCGGUGACCUGUCCCUUGGGGCUCUGAAAGAAA----AGUAGCAA--------------AG
((.((((((((((((.....)))))))))....(((.......))).((((((.((((((((.((....))))..)))))).))))))...----.)))))..--------------.. ( -38.20)
>DroAna_CAF1 100559 98 + 1
GUAGACAUGGGCACAGUCAAUGUGCCUGUAUCCAGCAUCGAUGGCGAUUUUCACAGCCUCGGUGACCUGACCUUUGGGGCUCUGAAAA--A----AUGAAGAUA---------------
((.((.(((((((((.....))))))))).))..)).(((....)))((((((.(((((((((......)))...)))))).))))))--.----.........--------------- ( -30.80)
>consensus
GUAGACAUAGGCACAGUCAAUGUGCCUGUAUCCAGCAUCAAUGGCCACUUUCACAGCCUCGGUGACCUGACCCUUGGGGCUCUGAAAG_AA____AUGAGCAAC___AUA_______AA
......(((((((((.....)))))))))..(((.......)))...((((.(.((((((((...........)))))))).).))))............................... (-23.30 = -22.13 +  -1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:40 2006