| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,595,414 – 11,595,513 |
| Length | 99 |
| Max. P | 0.606151 |
| Location | 11,595,414 – 11,595,513 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 77.89 |
| Mean single sequence MFE | -32.49 |
| Consensus MFE | -18.69 |
| Energy contribution | -18.27 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.606151 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11595414 99 - 23771897 ACAAUCACUGCCUACAGUCCCUUGGGAUCUCCCAACCGCCCAUGGGCCAAGGCUGGUGAUCCGGUCAUCCUAGAGGAGGCUAAGGUUGGUUUGC--------AUUGA ....(((.(((.....((((....))))...((((((.......((((..((((((....)))))).(((....)))))))..))))))...))--------).))) ( -35.00) >DroSec_CAF1 88887 99 - 1 ACAAUCACUGCCUACAGCCCCUUGGGAUCUCCCAACCGCCCAUGGGCCAAGGCUGGUGAUCCGGUCAUCCUAGAGGAGGCUAAGGUUCGUUUGC--------UUUUA .(((.....((((..(((((((((((((.........(((....)))...((((((....)))))))))))).))).)))).))))....))).--------..... ( -34.90) >DroEre_CAF1 79661 98 - 1 ACAAUCACUGCCUACAGCCCCUUGGGAUCUCCCAACCGCCCAUGGGCCAAGGCUGGUGAUCCGGUCAUCCUAGAGGAGGCUAAGGUUGCUUUGC--------U-UUA .(((.....((((..(((((((((((((.........(((....)))...((((((....)))))))))))).))).)))).))))....))).--------.-... ( -34.90) >DroWil_CAF1 77076 107 - 1 ACAAUUACUGCAUACAGCCCUCUGGGUUCACCCAAUCGUCCAUGGGCCAAGAAGGGUGAUCCUGUCAUCCUAGAGGAGCCUAAGGUUAGCUCUCAAUAGCUCUCUCA ................((((((((((.((((((....(((....)))......)))))).........)))))))).))....((..((((......))))..)).. ( -29.90) >DroMoj_CAF1 84188 98 - 1 ACCAUUACCGCAUACAGCCCACUGGGCAGCCCAAAUCGCCCAUGGGCCAAGGAAGGUGAUCCGGUUAUUCUAGAAGAGAAAAAGGUAAAAUAGG--------U-UUA (((((((((.......(((((.(((((..........)))))))))).......))))))((..((.(((.....))).))..)).......))--------)-... ( -28.44) >DroAna_CAF1 99943 99 - 1 GCGAUCACCGCCUACAGUCCUCUGGGCUCGCCCAACCGUCCCUGGGCCAAGGAAGGUGAUCCGGUCAUCCUGGAGGAGCCAAAGGUAAAACUAA--------UUUUA (.(((((((.(((..(((((...))))).(((((........)))))..)))..))))))))(((..(((....))))))..............--------..... ( -31.80) >consensus ACAAUCACUGCCUACAGCCCCCUGGGAUCUCCCAACCGCCCAUGGGCCAAGGAUGGUGAUCCGGUCAUCCUAGAGGAGGCUAAGGUUAGUUUGC________UUUUA ...((((((.......((((..((((............)))).)))).......))))))((.(((.(((....))))))...))...................... (-18.69 = -18.27 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:39 2006