| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,593,013 – 11,593,110 |
| Length | 97 |
| Max. P | 0.940771 |
| Location | 11,593,013 – 11,593,110 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 65.57 |
| Mean single sequence MFE | -22.71 |
| Consensus MFE | -5.81 |
| Energy contribution | -5.45 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.62 |
| Structure conservation index | 0.26 |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.940771 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11593013 97 - 23771897 UCCUCG------ACAACGACAACAACUACAACGACGACAUCUUCCGAUGGUGG---CCAAUCCACCACCUCAUCUGACCCCGUUGUGGAAGUCAGUCAAGGAACAA ((((.(------((...(((.....((((((((.((........)).((((((---.....)))))).............))))))))..))).))).)))).... ( -27.60) >DroPse_CAF1 75700 97 - 1 UCCUCUUCGUCUACAACGACUACAACCU---CCACAACAUCCAACGAUGAAAGCAAUCAGUCUGCUUCAGAGUCUGAGCCCGUUGUCGAUGCCAGCGAGU------ ..(((..((((.((((((.((.((..((---(.....((((....)))).(((((.......)))))..)))..))))..)))))).)))).....))).------ ( -22.40) >DroEre_CAF1 77553 88 - 1 UCCUCG------ACAACGACGACAACCACAACGACAACAUCAUCCGAUGAGGG---UCAAUCCACCUCCUCUCCGGCUCCUGUCGUAGAAGUCACUC--------- .....(------((..(.((((((........((.....))..(((..(((((---..........)))))..)))....)))))).)..)))....--------- ( -20.00) >DroYak_CAF1 91854 88 - 1 UCCUCG------ACCACGACGACAACCACAACGACAACAUCAUCCGAUGAGGG---UCAAUCCACCACCUCAUCUGACCCGGUUGUGGAAGUCAGUC--------- ......------.....((((((..(((((((.....((((....)))).(((---(((...............)))))).)))))))..))).)))--------- ( -29.36) >DroAna_CAF1 97869 85 - 1 UCAUCC------ACUACCACGACUACCA---CCACAACUUCUUCAGAUGAUGG---ACAAUCCACAACCGCUUCUGAUCCUGUUGUGGAAGAGACUU--------- ......------................---(((((((....(((((((.(((---.....)))))......)))))....))))))).........--------- ( -18.80) >DroPer_CAF1 78109 97 - 1 UCCUCCUCCUCUACAACGACAACAACCA---CCACAACAUCCAACGAUGAAAGCAAUCAGUUUGCUUCAGACUCUGAGCCCAUUGUCGCUGCCAGUGAGU------ .....(((((...((.((((((......---......((((....))))..(((((.....)))))((((...)))).....)))))).))..)).))).------ ( -18.10) >consensus UCCUCG______ACAACGACGACAACCA___CCACAACAUCAUCCGAUGAAGG___UCAAUCCACCACCGCAUCUGACCCCGUUGUGGAAGUCAGUC_________ ................(.(((((..............((((....))))..((........))..................))))).).................. ( -5.81 = -5.45 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:38 2006