Locus 3982

Sequence ID 3L_DroMel_CAF1
Location 11,588,928 – 11,589,033
Length 105
Max. P 0.833784
window6203

overview

Window 3

Location 11,588,928 – 11,589,033
Length 105
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 71.14
Mean single sequence MFE -25.31
Consensus MFE -7.22
Energy contribution -8.92
Covariance contribution 1.70
Combinations/Pair 1.16
Mean z-score -1.90
Structure conservation index 0.29
SVM decision value 0.72
SVM RNA-class probability 0.833784
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11588928 105 - 23771897
CAGUCCUCGACAACGACAACAACUACAACGACGACAUCUUCCGAUGGUGGCGAAUCCACCACCUCAUCUGACCCCGUUGUGGAAGUCAG----UCAAGGAACA--AAUGGC
...((((.(((...(((.....((((((((.((........))..(((((.(....).)))))...........))))))))..))).)----)).))))...--...... ( -28.00)
>DroPse_CAF1 71930 90 - 1
CAGUCCUCCUCCUCUACAACGACAACAACCACCACAACUUCAGA---------------------GUCUGACCCUGUUGUCGAUGCCAGUGAGUCCAGCAGCACUGUUGAA
........(((((...((.((((((((.....((..(((....)---------------------)).))....)))))))).))..)).)))..(((((....))))).. ( -17.60)
>DroSec_CAF1 84323 105 - 1
CAGUCCUCGACAACAACUACCACUACAACGACGACAUCUUCCGAUGCUGGCCAAUCCACCACCUCAUCUGACCCGGUUGUGGAAGUCAG----UCAAGGAACA--AACGGC
..(((.(((...................))).)))...((((...((((((...(((((.(((((....))...))).))))).)))))----)...))))..--...... ( -25.81)
>DroEre_CAF1 75205 105 - 1
CAGUCGUCGACAACGACGACAACUACAACGACGACAUCUUCCGAUUCAGGAAACCCCACCACCUCAUCUGACCCAAUUGUAGUAGCUAC----UCAGGGAACA--AACGGA
..(((((((....)))))))...................((((.....((.....))..............(((....((((...))))----...)))....--..)))) ( -23.40)
>DroYak_CAF1 91040 105 - 1
CAAUCCUCGACCACGACGACAACCACAACGACAACAUCAUCCGAUGAGGGUCAAUCCAGCACCUCAUCUGACCCGGUUGUGGAAGUCAA----UCAAGGAUCA--AACGGC
..(((((((....))).(((..(((((((.....((((....)))).((((((...............)))))).)))))))..)))..----....))))..--...... ( -31.76)
>consensus
CAGUCCUCGACAACGACAACAACUACAACGACGACAUCUUCCGAUGCUGGCCAAUCCACCACCUCAUCUGACCCGGUUGUGGAAGUCAG____UCAAGGAACA__AACGGC
...((((.((............(((((((.....((((....))))..((.....))..................)))))))...........)).))))........... ( -7.22 =  -8.92 +   1.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:37 2006