| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,584,540 – 11,584,631 |
| Length | 91 |
| Max. P | 0.789131 |
| Location | 11,584,540 – 11,584,631 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 78.92 |
| Mean single sequence MFE | -23.57 |
| Consensus MFE | -11.35 |
| Energy contribution | -10.80 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.789131 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11584540 91 - 23771897 GAUGGAACAAUCAAUAUUAGAGUUG-GUCCUUGCGAAU---GGAUAGGGCCCAGAUUAAACGGCUCAUGACUUUAAUGUAUACGAUUGUAAAAUA ......((((((.(((((((((((.-((((........---)))).(((((..........)))))..)))))))))))....))))))...... ( -24.90) >DroSec_CAF1 80058 92 - 1 GAUGGGACAAUCAAUAUUAGAGUUGGGUUCUUGUGAAU---GGAUAGGGCCCAGAUUAAACGGCUCAUGACUUUAAUAAACACGAUUGUAAAAUA ......((((((..((((((((((..((((....))))---.....(((((..........)))))..)))))))))).....))))))...... ( -21.10) >DroSim_CAF1 81823 91 - 1 GAUGGAACAAUCAAUAUUAGAGUUG-GUCCUUGCGAAU---GGAUAGGGCCCAGAUUAAACGGCUCAUGACUUUAAUGUACACGAUUGUGAAAUA ......((((((.(((((((((((.-((((........---)))).(((((..........)))))..)))))))))))....))))))...... ( -24.90) >DroEre_CAF1 71520 91 - 1 GAUGGAACAAUCAAUAUUAGAGUUG-GUUCGUGAGAAU---GGCUAAGGCCAAGGUAAUACGGCUCAAGACUUUAAUGUACACGAUUGUAAAAUA ......((((((.(((((((((((.-((((....))))---(((....))).................)))))))))))....))))))...... ( -23.80) >DroYak_CAF1 86290 91 - 1 GAUGGAACAGUCAAUAUUAGAGUUG-GUCCGUGGGAAU---GGCUAAGGCCAAGGCAAAACGGCGCAAGACUUUAAUGUACACGAUUGUAAAAUA ......((((((.(((((((((((.-((((((..(..(---(((....))))...)...)))).))..)))))))))))....))))))...... ( -26.30) >DroAna_CAF1 92304 87 - 1 GCUGGACCAAUCGUUAUUAAAACUG-GUCCAUUAGGUUGAGGGUUGAGACCGCAAUGAU-------AGGAUUUGAGUUGAAACGAUUGUAAAAUA .......((((((((.((((..(..-(((((((..((((.((.......)).)))))))-------.))))..)..))))))))))))....... ( -20.40) >consensus GAUGGAACAAUCAAUAUUAGAGUUG_GUCCUUGAGAAU___GGAUAAGGCCCAGAUUAAACGGCUCAUGACUUUAAUGUACACGAUUGUAAAAUA ......((((((.(((((((((((...((.....)).....((......)).................)))))))))))....))))))...... (-11.35 = -10.80 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:36 2006