Locus 3978

Sequence ID 3L_DroMel_CAF1
Location 11,574,533 – 11,574,633
Length 100
Max. P 0.555487
window6197

overview

Window 7

Location 11,574,533 – 11,574,633
Length 100
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 82.73
Mean single sequence MFE -31.23
Consensus MFE -22.13
Energy contribution -21.80
Covariance contribution -0.33
Combinations/Pair 1.40
Mean z-score -1.55
Structure conservation index 0.71
SVM decision value 0.04
SVM RNA-class probability 0.555487
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11574533 100 + 23771897
GGACAAGAGUGUCCGGCGGCGAAUUUCUGCUAUAAUCCCAAGUGCGUUUGCCGCAAAGGAUUUCGGCGACUCAAUGGAGUCUGUGUGCCAAAACACGGUU
(((((....)))))(((((((.......(((..(((((....((((.....))))..)))))..)))(((((....)))))))).))))........... ( -33.00)
>DroSec_CAF1 70219 100 + 1
GGACAAGAGUGUCCGGCGGAAAAUUUCUGCUAUAAUCCCAAGUGCGUUUGCCGCAAAGGAUUUCGGCGACUCAAUGGAGUCUGUGUGCCAAAACACGAUU
(((((....)))))((((.(........(((..(((((....((((.....))))..)))))..)))(((((....)))))..).))))........... ( -32.90)
>DroSim_CAF1 71947 100 + 1
GGACAAGAGUGUCCGGCGGCAAAUUUCUGCUAUAAUCCCAAGUGCGUUUGCCGCAAAGGAUUUCGGCGACUCAAUGGAGUCUGUGUGCCAAAACACAAUU
(((((....)))))(((((((.......(((..(((((....((((.....))))..)))))..)))(((((....)))))))).))))........... ( -33.70)
>DroEre_CAF1 61398 100 + 1
GAACAAUUUUGUCCCGCGGCAAAUUUCUGCUAUAAUCCCAAGUGCGUUUGUCGCAAAGGAUUUCGGCGUCUCAAAGGAGUCUGUGUGCCGAAACACAGUU
........((((....(((((.......(((..(((((....((((.....))))..)))))..)))(.(((....))).)....)))))....)))).. ( -27.10)
>DroYak_CAF1 76338 100 + 1
GAUGAAUUUUGUCCGGCGGCAAACUUCUGCUAUAAUCCCAAGUGCGUUUGCCGCAAAGGAUAUCGGCGCCUCAAUGGAGUCUGUGUGCCGAAACACAGUU
.........(((((.(((((((((..((............))...)))))))))...)))))((((((((((....))).....)))))))......... ( -34.00)
>DroAna_CAF1 82422 100 + 1
AAUGACUUUUGUCCGGCGGAAGAUUAUUGUUUUAAUCCCAAGUGUGUUUGCCGAGAAGGAUAUCGAAAGGUUCGAGGUUCCUGUAUUCCCAAACAUGCCU
...(((....))).(((((..(((((......)))))))....(((((((..((..((((..((((.....))))...))))...))..)))))))))). ( -26.70)
>consensus
GAACAAGAGUGUCCGGCGGCAAAUUUCUGCUAUAAUCCCAAGUGCGUUUGCCGCAAAGGAUUUCGGCGACUCAAUGGAGUCUGUGUGCCAAAACACAGUU
..........((((.(((((((((..((............))...)))))))))...))))......(((((....)))))(((((......)))))... (-22.13 = -21.80 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:31 2006