Locus 3977

Sequence ID 3L_DroMel_CAF1
Location 11,570,630 – 11,570,720
Length 90
Max. P 0.576592
window6196

overview

Window 6

Location 11,570,630 – 11,570,720
Length 90
Sequences 4
Columns 90
Reading direction forward
Mean pairwise identity 89.44
Mean single sequence MFE -18.65
Consensus MFE -12.57
Energy contribution -14.07
Covariance contribution 1.50
Combinations/Pair 1.00
Mean z-score -2.03
Structure conservation index 0.67
SVM decision value 0.09
SVM RNA-class probability 0.576592
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11570630 90 + 23771897
AGUGUGAGAGAGAAACCCGAAAGGUGCCGAAGUUAACCAAAGUGAGAUGAGUAGUGACGAAAGGGAGGAUACAAGGGGAUUUCAGCACUA
(((((....((((..(((....(((..........)))............(((....(....)......)))..)))..)))).))))). ( -19.60)
>DroSec_CAF1 66372 90 + 1
AGUGUGAGAGAGAAACCCGAAAGGUGCCGAAGUUAACCAAAGUGAGAUGAGUAGUGACGAAAGGGAGGAAACAAGGGGAUUUCAGCACUA
(((((....((((..(((........((...((((((((........)).))..))))....))..(....)..)))..)))).))))). ( -19.50)
>DroSim_CAF1 68083 90 + 1
AGUGUGAGAGAGAAACCCGAAAGGUGCCGAAGUUAACCAAAGUGAGAUGAGUAGUGACGAAAGGGAGGAAACAAGGGGAUUUCAGCACUA
(((((....((((..(((........((...((((((((........)).))..))))....))..(....)..)))..)))).))))). ( -19.50)
>DroYak_CAF1 72165 81 + 1
AGUGUGCGAGAGAUAAACGAAGGGUGCCGAAGCUAACCGAAUUGAGAUGAGUAGUGACGAAAGGGAGGUAACAAG---------GCACUA
.((...(....)....))....((((((...(((..((...(((..((.....))..)))..))..))).....)---------))))). ( -16.00)
>consensus
AGUGUGAGAGAGAAACCCGAAAGGUGCCGAAGUUAACCAAAGUGAGAUGAGUAGUGACGAAAGGGAGGAAACAAGGGGAUUUCAGCACUA
(((((....((((..(((....(((..........)))...................(....)...........)))..)))).))))). (-12.57 = -14.07 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:30 2006