Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 11,566,653 – 11,566,753 |
Length | 100 |
Max. P | 0.993967 |
Location | 11,566,653 – 11,566,753 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 95.63 |
Mean single sequence MFE | -33.72 |
Consensus MFE | -33.72 |
Energy contribution | -33.72 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.60 |
Structure conservation index | 1.00 |
SVM decision value | 2.44 |
SVM RNA-class probability | 0.993967 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11566653 100 + 23771897 GCUGCCUGCCGUGUGCCACUUUGGCCAUGUUCGUGGCCGUGGCCGUGGCCUCGACUCAUGCGCUCGUUUUCGUUUCCCUGCAGCUUUUCCA-ACACAACUC (((((..((((((.(((((...((((((....)))))))))))))))))..(((.....((....))..))).......))))).......-......... ( -33.80) >DroSec_CAF1 62172 101 + 1 GCUGCCUGCCGUGUGCCACUUUGGCCAUGUUCGUGGCCGUGGCCGUGGCCUCGACUCAUGCGCUCGUUCUCGUUUCCCUGCAGCUUUCCCAAACACAACUC (((((..((((((.(((((...((((((....)))))))))))))))))..(((.....((....))..))).......)))))................. ( -33.80) >DroSim_CAF1 63813 101 + 1 GCUGCCUGCCGUGUGCCACUUUGGCCAUGUUCGUGGCCGUGGCCGUGGCCUCGACUCAUGCGCUCGUUCUCGUUUCCCUGCAGCUUUCCCAAACACAACUC (((((..((((((.(((((...((((((....)))))))))))))))))..(((.....((....))..))).......)))))................. ( -33.80) >DroEre_CAF1 52993 99 + 1 GCUGCCUGCCGUGUGCCACUUUGGCCAUGUUCGUGGCCGUGGCCGUGGCCUCGACUCAUGCGCUCGUUCUCGUUUCCCUGCAGCCUCAC--AACUCAACUC (((((..((((((.(((((...((((((....)))))))))))))))))..(((.....((....))..))).......))))).....--.......... ( -33.40) >DroYak_CAF1 67891 99 + 1 GCUGCCUGCCGUGUGCCACUUUGGCCAUGUUCGUGGCCGUGGCCGUGGCCUCGACUCAUGCGCUCGUUCUCGUUUCCCUGCAGCUUCAC--AACUCAACUC (((((..((((((.(((((...((((((....)))))))))))))))))..(((.....((....))..))).......))))).....--.......... ( -33.80) >consensus GCUGCCUGCCGUGUGCCACUUUGGCCAUGUUCGUGGCCGUGGCCGUGGCCUCGACUCAUGCGCUCGUUCUCGUUUCCCUGCAGCUUUACCAAACACAACUC (((((..((((((.(((((...((((((....)))))))))))))))))..(((.....((....))..))).......)))))................. (-33.72 = -33.72 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:29 2006