Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 11,563,821 – 11,563,933 |
Length | 112 |
Max. P | 0.500000 |
Location | 11,563,821 – 11,563,933 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.09 |
Mean single sequence MFE | -37.57 |
Consensus MFE | -33.08 |
Energy contribution | -33.53 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.13 |
Mean z-score | -1.07 |
Structure conservation index | 0.88 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11563821 112 - 23771897 --------AAGAUGUUUAACCGCUGCGGUUCUUCUUCCUGCGGAUCGUCUUGACCUUCUUGGGGCGGUGCACCUUGCGCUUGUAGUGGAUCACGUGCUUCUUCUUGGAGGAGGAGGGCGA --------...........(((((((((........)).((..(((((((..(.....)..)))))))((.....))))..)))))))....(((.(((((((.....))))))).))). ( -38.40) >DroSim_CAF1 60705 111 - 1 ---------AGAUCCUUAACCGCUGCGGUUCUUCUUCUUGUGGAUCGUCUUGACCUUCUUGGGGCGGUGCACCUUGCGCUUGUAGUGGAUCGUGUGCUUCUUCUUCUUGGAAGAGGACGC ---------.(((((...(((((((((((((..........))))))).....((.....))))))))((.....)).........)))))((((.((((((((....)))))))))))) ( -39.10) >DroYak_CAF1 63457 120 - 1 CUAUAGUUAAGAUGGUUAACCGCUGCGGUUCUUCUUCCUGUGGAUCUUCUUGACCUUCUUGGGCUUGUGCACCUUGCGUUUGUAGUGGACCACGUGCUUCUUCUUUUUGGAGGAGGACGA ............((((...(((((((((((.....(((...))).......)))).....((((....)).))........)))))))))))(((.(((((((.....))))))).))). ( -35.20) >consensus ________AAGAUGCUUAACCGCUGCGGUUCUUCUUCCUGUGGAUCGUCUUGACCUUCUUGGGGCGGUGCACCUUGCGCUUGUAGUGGAUCACGUGCUUCUUCUUCUUGGAGGAGGACGA ...................(((((((((........)).(((.(((((((..(.....)..))))))).))).........)))))))....(((.((((((((....))))))))))). (-33.08 = -33.53 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:28 2006