Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 11,552,502 – 11,552,620 |
Length | 118 |
Max. P | 0.714028 |
Location | 11,552,502 – 11,552,620 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.01 |
Mean single sequence MFE | -19.18 |
Consensus MFE | -9.06 |
Energy contribution | -13.06 |
Covariance contribution | 4.00 |
Combinations/Pair | 1.09 |
Mean z-score | -2.51 |
Structure conservation index | 0.47 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.714028 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11552502 118 - 23771897 GGAACUGAACAGAUAUCUAUAAAAGCAUAAUCUCAAUUCAGUAAACCACUACACUUUCUUGCACCACCGCGAUAAGGUUUUGAAUCCAUUAUCAGUUCCCAAUAUUUCCAACAUAA--CA ((((((((..((((((((.....)).)).))))..((((((((......)))(((((.((((......)))).)))))..)))))......)))))))).................--.. ( -20.90) >DroSec_CAF1 49858 118 - 1 GGAACUGAACAGAUAACUAUAAAAGCAUAAUCUCAAUCCAGUAAAUCACUACACUUGCUUGCACCACCGCGAUAAGAUUUUUAUUCCAUUAUCAGUUCCCGAUAUUUCCAACAAAG--CA ((((((((...(((....(((((((...............(((......))).((((.((((......)))))))).)))))))...))).)))))))).................--.. ( -18.40) >DroSim_CAF1 49424 118 - 1 GGAACUGAACAGAUUACUAUAAAAGCCUAAUCGCAAUUCACUAAAUCACUACACUUGCUUGCACCACCGCGAUAAGGUUUUGAUUCCAUUAUCAGUUCCCAAUAUUUCCAACAAAA--CA ((((((((...(((((((.....))..)))))...........(((((..((.((((.((((......))))))))))..)))))......)))))))).................--.. ( -23.80) >DroYak_CAF1 50186 108 - 1 GGAACUCAGUAGGUACAUAUAAAAGCCUAAUCGUAACACUCUCAAUCACAACACUUCCGUUCACCACUUUGAUAAGGCUUUUAUUUCA------------AAUAACCCCAACCAAAUUCA ((.(((.....)))....((((((((((.((((....................................)))).))))))))))....------------...........))....... ( -13.62) >consensus GGAACUGAACAGAUAACUAUAAAAGCAUAAUCGCAAUUCACUAAAUCACUACACUUGCUUGCACCACCGCGAUAAGGUUUUGAUUCCAUUAUCAGUUCCCAAUAUUUCCAACAAAA__CA ((((((((..........((((((((((.(((((..................................))))).)))))))))).......))))))))..................... ( -9.06 = -13.06 + 4.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:26 2006