Locus 3971

Sequence ID 3L_DroMel_CAF1
Location 11,536,324 – 11,536,429
Length 105
Max. P 0.711154
window6188

overview

Window 8

Location 11,536,324 – 11,536,429
Length 105
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 76.92
Mean single sequence MFE -23.86
Consensus MFE -12.73
Energy contribution -13.45
Covariance contribution 0.72
Combinations/Pair 1.19
Mean z-score -1.83
Structure conservation index 0.53
SVM decision value 0.38
SVM RNA-class probability 0.711154
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11536324 105 - 23771897
CUGCUGAUUGUCAACAACCAGGGCUGCAGGCUCACAACAGCAGUUG--------UUA-AAACGAUAUUAAGGUGAUCUAUCACCAACAGUUUGCAGCUGCAAAUACAUUAAGUG-
...(((.(((....))).)))(((((((((((.(((((....))))--------)..-............(((((....)))))...)))))))))))................- ( -30.50)
>DroSec_CAF1 42768 105 - 1
CAGCUGAUUGUCAACAACCAGGGCUGCAAGCUCAAAAAAGCAGUUC--------UUA-AAACGAUGUUAAGGUGAUCUAUAACCAACAGUUUGCAGCUGUAAAUACAUUAAGGG-
...(((.(((....))).)))(((((((((((......(((((((.--------...-.)))..))))..(((........)))...)))))))))))................- ( -24.40)
>DroSim_CAF1 40896 105 - 1
CAGCUGAUUGUCAACAACCAGGGCUGCAAGCUCAAAAAAGCAGUUC--------UUA-UAACGAUAUUAAGGUCAUUUAUAACAAACAGUUUGCAGCUGCAAAUACAUAACAUG-
...(((.(((....))).)))(((((((((((..........(((.--------...-.)))(((......))).............)))))))))))................- ( -21.50)
>DroEre_CAF1 37003 105 - 1
CAGCUGAUUGUCAACAACCAGGGCUGCAGGCUCAAAACAGCAGUUA--------UUA-AAGCGACAUUAAAGUGAUCUGUCAACAACAGUUUGCAGCUGCAAAUACAUAAAAUG-
...(((.(((....))).)))(((((((((((.......(((((((--------((.-............))))).)))).......)))))))))))................- ( -24.26)
>DroYak_CAF1 41600 105 - 1
CAGCUGAUUGUCAACAACCAGGGCUGCAGGCAGAAAACAUCAGUUA--------AUA-AAACGAACUUAAGCCGAUAUAUCAGCAACAGUUUGCAGCUGCAAAUAAAUAAAAUG-
...(((.(((....))).)))((((((((((...........(((.--------...-.)))........((.((....)).))....))))))))))................- ( -22.50)
>DroAna_CAF1 55918 110 - 1
CAGCUGAUAGUCAACAACCAGGGCUGCAUAAAGAUAACAGCCGUUCGGUGGCUGUUAAAAGCGAUACAUA---UAACUCUUAAUACUAAUU-A-AACCUAAAAUAUAUAAGGUAA
..((((.(((((.........)))))).......(((((((((.....)))))))))..)))........---..................-.-.((((..........)))).. ( -20.00)
>consensus
CAGCUGAUUGUCAACAACCAGGGCUGCAGGCUCAAAACAGCAGUUC________UUA_AAACGAUAUUAAGGUGAUCUAUCACCAACAGUUUGCAGCUGCAAAUACAUAAAAUG_
...(((.(((....))).)))((((((((((.........................................................))))))))))................. (-12.73 = -13.45 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:22 2006