Locus 397

Sequence ID 3L_DroMel_CAF1
Location 1,158,232 – 1,158,345
Length 113
Max. P 0.655292
window582

overview

Window 2

Location 1,158,232 – 1,158,345
Length 113
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 88.32
Mean single sequence MFE -26.14
Consensus MFE -18.46
Energy contribution -21.26
Covariance contribution 2.80
Combinations/Pair 1.11
Mean z-score -1.97
Structure conservation index 0.71
SVM decision value 0.25
SVM RNA-class probability 0.655292
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1158232 113 - 23771897
-AUUCGAUUGGCAGGGGGAAUAAUGUGGCAGACAAGAUAAAGCCAUAUUAUAGCCAGCAUUCUCUUUGAUUGGCAGUUAAAUAUCUUAUUCCGAGUUAAUUGAAACAAAUUAAA
-.((((((((((.((((..((((((((((............)))))))))).(((((((.......)).)))))..............))))..)))))))))).......... ( -31.10)
>DroSec_CAF1 42143 112 - 1
-AUUCGAUUGGCAGGGGAAAUAAUGUGGCAGACAAGAUAAAGCCAUAUUAUAGC-AGCAUUCUCUUUGAUUGGCAGUAAAAUAUCUUAUUCCGAGUUAAUUGAAACAAAUGAAA
-.(((((((((((((((((((((((((((............))))))))))...-....)))))))...((((.(((((......))))))))))))))))))).......... ( -28.71)
>DroSim_CAF1 40020 112 - 1
-AUUCGAUUGGUAGGGGGAAUAAUGUGGCAGACAAGAUAAAGCCAUAUUAUAGC-AGCAUUCUCUUUGAUUGGCAGUAAAAUAUCUUAUUCCGAGUUAAUUGAAACAAAUUAAA
-.(((((((((((((((((((((((((((............))))))))))...-.....)))))))).((((.(((((......))))))))).))))))))).......... ( -25.70)
>DroEre_CAF1 40069 104 - 1
UAUA---------GACAGAAUAAUGUGGCAGGCGAGUUAAAGCCAUAUUAUAGC-AGCAUUCUCUUUGAUUGGCAGUAAAAUGUCUUAUUCCGAGCCGAUUGAAACAUAUUAAA
....---------......((((((((((............))))))))))...-.........((..(((((((((((......)))))....))))))..)).......... ( -20.80)
>DroYak_CAF1 43518 112 - 1
UAUUCGAUUGGU-GGGGGAAUAAUGUGGCAGACGAGAUAAAGCCUUAUUAUAGC-AGCAUUCUCUUUGAUUGGCACUAAAAUAUCUUAUGCCGAGUCAAUUGAAACGAAUUAAA
..(((((((((.-((((((((..((((((............)))........))-)..))))))))...((((((.(((......))))))))).))))))))).......... ( -24.40)
>consensus
_AUUCGAUUGGCAGGGGGAAUAAUGUGGCAGACAAGAUAAAGCCAUAUUAUAGC_AGCAUUCUCUUUGAUUGGCAGUAAAAUAUCUUAUUCCGAGUUAAUUGAAACAAAUUAAA
..(((((((((((((((((((((((((((............)))))))))).(....)..)))))))).((((.(((((......))))))))).))))))))).......... (-18.46 = -21.26 +   2.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:52 2006