Locus 3967

Sequence ID 3L_DroMel_CAF1
Location 11,513,441 – 11,513,550
Length 109
Max. P 0.964226
window6180

overview

Window 0

Location 11,513,441 – 11,513,550
Length 109
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 94.34
Mean single sequence MFE -30.95
Consensus MFE -26.61
Energy contribution -28.18
Covariance contribution 1.56
Combinations/Pair 1.03
Mean z-score -2.86
Structure conservation index 0.86
SVM decision value 1.56
SVM RNA-class probability 0.964226
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11513441 109 - 23771897
UUCCCAAAGCUGUCUAGCAAGCUUAAAUAUUAGUUUGCUUUCUUGUAAGAGUUUCACCACCUCAUUAACGACGGAGAUGGACACCGCCUCCAACUCUGGGGUAUUAUUU
.(((((.((..(((.((((((((........)))))))).........(((.........)))......)))((((.(((...))).))))..)).)))))........ ( -27.80)
>DroSec_CAF1 19368 108 - 1
UUCCCAAAGCUGUCUAGCAAGCUAAAAUAUUAGUUU-CUUUCUUGUAAGAGUUUCACCACCUCAUUAACGAGGGAGGUGGACACCGCCUCCAACUCUUGGGUAUUAUUU
..(((...((.....((.(((((((....)))))))-)).....))(((((((.......(((......)))((((((((...))))))))))))))))))........ ( -32.10)
>DroEre_CAF1 13749 109 - 1
UUCCCUAAGCUGUCUAGCAAGCUAAAAUAUUAGUUUGCUUUCUUGUAAGAGUUUCACCACCUCAUUAACGAAGGAGGUGGACACCGCCUCCAAGUCUUGGGUAUUAUUU
...((((((((....((((((((((....))))))))))(((...((((((.........))).)))..)))((((((((...)))))))).)).))))))........ ( -33.90)
>DroYak_CAF1 18090 109 - 1
UUCCUUAAGCUGUCUAGCCAGCUAAAAUAUUAGUUCGCUUUCUUGUAAGAGUUUCACCAGCUCAUUAACGAAGGAGGUGGACACCGCCUCCAAGUCUUGGGUAUUAUUU
...((((((((....(((.((((((....)))))).)))(((...((((((((.....))))).)))..)))((((((((...)))))))).)).))))))........ ( -30.00)
>consensus
UUCCCAAAGCUGUCUAGCAAGCUAAAAUAUUAGUUUGCUUUCUUGUAAGAGUUUCACCACCUCAUUAACGAAGGAGGUGGACACCGCCUCCAACUCUUGGGUAUUAUUU
..(((...((.....((((((((((....)))))))))).....))(((((((........((......)).((((((((...))))))))))))))))))........ (-26.61 = -28.18 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:15 2006