Locus 3965

Sequence ID 3L_DroMel_CAF1
Location 11,510,618 – 11,510,726
Length 108
Max. P 0.685098
window6178

overview

Window 8

Location 11,510,618 – 11,510,726
Length 108
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 85.17
Mean single sequence MFE -30.33
Consensus MFE -23.24
Energy contribution -23.40
Covariance contribution 0.16
Combinations/Pair 1.12
Mean z-score -1.71
Structure conservation index 0.77
SVM decision value 0.32
SVM RNA-class probability 0.685098
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11510618 108 - 23771897
ACCAUAUGUACGAAGUACUUUUCGUUUGCAACUCUUUACCAAACUG--UGCGAAUGUUUUUCGUAUGCUGAAUGGGUGCCGCAUUGCCAAACGGGCAAAACGGUACUUUU
.((((.(((((((((....))))))..)))...............(--((((((.....))))))).....))))((((((..(((((.....)))))..)))))).... ( -32.30)
>DroSec_CAF1 16577 110 - 1
ACCUUAUGUACGAAGUACUUCUCGCUUGCAACUUUUUACCAAACUGUUUGCGAAUGUUUUUCGUAUGCUGAAUGGGUGCCGCAUUGCCAAACGGGCAAAACGGUACUUUU
.......((((((((.((...((((..(((..............)))..))))..)).)))))))).......((((((((..(((((.....)))))..)))))))).. ( -33.34)
>DroSim_CAF1 14943 110 - 1
CCCUUAUGUACGAAGUACUUCUCGUUUGCAACUUUUUACCAAACAGUUUGCGAAUGUUUUUCGUAUGCUGAAUGGGUGCCGCAUUGCCAAACGGGUAAAACGGUACUUUU
...........((((((((.(((((((((((.....((((...((((.((((((.....)))))).))))....)))).....))).))))))))......)))))))). ( -32.70)
>DroEre_CAF1 11000 109 - 1
ACCUUAUGUACAGAGUAUGCCGGCUUUGAAACUCGUUACCAAACUGUUUGCCAAG-UUUUUCGUAUGCUGAAUGGGUGCCGCAUUGCCAAACGGGCGAAACGGUACUUUU
..........(((.(((((..(((((.(((((..(((....))).)))).).)))-))...))))).)))...((((((((..(((((.....)))))..)))))))).. ( -28.10)
>DroYak_CAF1 15209 99 - 1
ACCUUAGGUACAGAGUAUGCC----------UUCGUUACCCAACUGUUUGCCAAU-GUUUUCGUAUGCUGAAUGGGUGCCGCAUUGCCAAACGGGCGAAACGGUACUUUU
.....((((((...((.((((----------(..(((....))).(((((.((((-((....((((.(.....).)))).)))))).))))))))))..)).)))))).. ( -25.20)
>consensus
ACCUUAUGUACGAAGUACUUCUCGUUUGCAACUCUUUACCAAACUGUUUGCGAAUGUUUUUCGUAUGCUGAAUGGGUGCCGCAUUGCCAAACGGGCAAAACGGUACUUUU
.......((((...))))....................(((....((.((((((.....)))))).))....)))((((((..(((((.....)))))..)))))).... (-23.24 = -23.40 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:13 2006