| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,506,397 – 11,506,504 |
| Length | 107 |
| Max. P | 0.796302 |
| Location | 11,506,397 – 11,506,504 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 74.81 |
| Mean single sequence MFE | -23.13 |
| Consensus MFE | -11.31 |
| Energy contribution | -14.13 |
| Covariance contribution | 2.81 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.796302 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11506397 107 - 23771897 GCUUUAUCCGGAUUAGACUCUUUGGAUCUUCGAGUAUCUAUCUAUACAAAAGCUAGAUCCUUCCUAAGACUUAGCUUAGAUCAGACUUGGGGAUCAACAAA---CA-AAAA ........................(((((((((((....(((((......((((((.((........)).)))))))))))...)))))))))))......---..-.... ( -22.80) >DroSec_CAF1 12421 107 - 1 GCUUUAUCCGGAUUAUACUCUUUGGAUGCUCGAGUAUCUAUCUAUA-AAAAGCUAGAUCCUUUCUAAGACUUAACUUAGAUCAGACUUGGGGAUCAACAAA---CAUAAAA (((((....((((.((((((...........))))))..))))...-.)))))..(((((((((((((......))))))........)))))))......---....... ( -24.00) >DroSim_CAF1 10787 106 - 1 GCUUUAUCCGGAUUAUACUCUUUGGAUGUUCGAGUAUCUAUCUAUA-AAAAGCUAGAUCCUUUCUAAGACCUAACUUAGAUCAGACUUGGGGAUCAACAAA---CA-AAAA (((((....((((.((((((...........))))))..))))...-.)))))..(((((((((((((......))))))........)))))))......---..-.... ( -24.00) >DroYak_CAF1 10802 88 - 1 ACUUUAUCAGUUGUACACUCUUUGCA-----------------AUU-GAAAGACUGAUCUUUCUUGAGACCUAAAUUAGAUCAGACUCAAGGAUCAGAAAGGAA-----AC .((((.(((((((((.......))))-----------------)))-))....((((((...((((((.................))))))))))))))))...-----.. ( -21.73) >consensus GCUUUAUCCGGAUUAUACUCUUUGGAUGUUCGAGUAUCUAUCUAUA_AAAAGCUAGAUCCUUCCUAAGACCUAACUUAGAUCAGACUUGGGGAUCAACAAA___CA_AAAA (((((....((((.((((((...........))))))..)))).....)))))..(((((((((((((......))))))........)))))))................ (-11.31 = -14.13 + 2.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:07 2006