Locus 396

Sequence ID 3L_DroMel_CAF1
Location 1,156,397 – 1,156,495
Length 98
Max. P 0.896947
window581

overview

Window 1

Location 1,156,397 – 1,156,495
Length 98
Sequences 3
Columns 117
Reading direction forward
Mean pairwise identity 65.06
Mean single sequence MFE -43.93
Consensus MFE -26.33
Energy contribution -26.56
Covariance contribution 0.23
Combinations/Pair 1.21
Mean z-score -1.35
Structure conservation index 0.60
SVM decision value 0.99
SVM RNA-class probability 0.896947
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1156397 98 + 23771897
AGUCGGAGCACUGGCGCCCGA---UCCACUG-CCAGAUCCUGCUCCGCCCGCUCC---CGCUGCGCCAGCUCCGGCGGCUGCGGCUGCC------------AAGGCGCUGGCCAUGG
.(.(((((((((((((.....---.....))-))))....))))))))......(---((.((.((((((.((((((((....))))))------------..)).))))))))))) ( -47.00)
>DroWil_CAF1 37463 115 + 1
-GAUGUUGAACCGCCGCCUGAAAUGCCACUUGCCGCAA-CACUUGCACCCACACCGGGAGCAGCGGCACCACCGGCAGCAGCGGCUGCCAAUGAAGCACCCAAAGCACUGGCCAUGG
-.........(((((((.((...((((...((((((..-....(((.(((.....))).))))))))).....)))).))))))).((((.((............)).))))...)) ( -40.80)
>DroYak_CAF1 41668 92 + 1
AGUUGGAGCACUGGCUCCAGA---UCCACUU-CCGGAUCCCGCUCC------UCC---AGCUGCGCCCGCUCCGGCGGCUGCGGCUGCC------------AAGGCGCUGGCCAUGG
...((((((....))))))((---(((....-..)))))((((.((------(.(---(((((((.((((....)))).))))))))..------------.))).)).))...... ( -44.00)
>consensus
AGUUGGAGCACUGGCGCCAGA___UCCACUU_CCGGAUCCAGCUCC_CCC_CUCC___AGCUGCGCCAGCUCCGGCGGCUGCGGCUGCC____________AAGGCGCUGGCCAUGG
....(((((...(((((.((..............(((......)))..............))))))).)))))((((((....))))))..............(((....))).... (-26.33 = -26.56 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:51 2006