Locus 3958

Sequence ID 3L_DroMel_CAF1
Location 11,493,906 – 11,494,014
Length 108
Max. P 0.975724
window6164

overview

Window 4

Location 11,493,906 – 11,494,014
Length 108
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 73.09
Mean single sequence MFE -29.33
Consensus MFE -17.11
Energy contribution -17.50
Covariance contribution 0.39
Combinations/Pair 1.30
Mean z-score -2.06
Structure conservation index 0.58
SVM decision value 1.76
SVM RNA-class probability 0.975724
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11493906 108 - 23771897
ACAUGUAUACAUU----CU--U-----AUUUUCUAUUCUC-UUAGAGGAACUGGCUGCCGCAAUUCGAAAGGAGUCCGAUCUUCGUUUUGGACUCUAUUAUUCUCUAUUCGAAUGGUUCA
.............----..--.-----.....((((((..-.(((((((....((....)).........(((((((((........)))))))))....)))))))...)))))).... ( -27.00)
>DroSec_CAF1 8960 108 - 1
ACGUAUAUACAUU----UA--U-----AUUUUCUACUCUC-CCAGAGGAACUGGCUGCCGCAAUUCGAAAGGAGUCCGAUCUUCGUUUCGGACUCUACUAUUCUUUGUUUGAAUGGUUCA
..(((((......----))--)-----))((((..(((..-...)))(((...((....))..)))))))(((((((((........)))))))))(((((((.......)))))))... ( -27.90)
>DroSim_CAF1 3688 108 - 1
ACGUAUAUACAUU----CU--U-----AUUUUCUAUUCUC-CCAGAGGAACUGGCUGCCGCAAUUCGAAAGGAGUCCGAUCUUCGUUUCGGACUCUACUAUUCUCUGUUCGAAUGGUUCA
.............----..--.-----.....((((((..-.(((((((....((....)).........(((((((((........)))))))))....)))))))...)))))).... ( -29.90)
>DroPer_CAF1 8189 111 - 1
GGAGGCAUAGAUU----CAGAU-----AUAUACCGCCCUCCACAGAGGAACUUGCGGCGGCCGUUCGCGGUGUUUCGGAUCUGAAGUUCGGCCUGUACUAUUCCCUCUUCGAGUGGUUCA
..((((.....((----(((((-----..(((((((((((....)))).....((((...))))..))))))).....))))))).....))))(.(((((((.......))))))).). ( -38.50)
>DroEre_CAF1 4644 108 - 1
---------AAUUAUAUGU--UAAUACACUUUGCAUUUUC-CCAGAGGAACUGGCUGCCGCUAUACGAAAGGAGUCCGAUCUUCGGUUCGGACUUUACUAUUCCCUAUUCGAAUGGUUCA
---------..........--.......(((((.......-.)))))((((((((....)))...((((((((((((((.(....).))))))).........))).))))...))))). ( -27.30)
>DroYak_CAF1 5387 103 - 1
---------AAUU----CU--UAACAAAAUU-CAAUUUUC-CCAGAGGAACUGGCCGCCGCCAUUCGAAAGGAGACCAAUCUUCGGUUUGGACUCUACUACUCCCUAUUCGAGUGGUUCA
---------....----..--........((-(....(((-(....)))).((((....))))...))).((((.((((.(....).)))).))))(((((((.......)))))))... ( -25.40)
>consensus
AC_U_UAUACAUU____CU__U_____AUUUUCUAUUCUC_CCAGAGGAACUGGCUGCCGCAAUUCGAAAGGAGUCCGAUCUUCGGUUCGGACUCUACUAUUCCCUAUUCGAAUGGUUCA
...............................................(((((.((....)).(((((((.(((((((((........)))))))))...........)))))))))))). (-17.11 = -17.50 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:59 2006