Locus 3957

Sequence ID 3L_DroMel_CAF1
Location 11,493,468 – 11,493,586
Length 118
Max. P 0.689837
window6163

overview

Window 3

Location 11,493,468 – 11,493,586
Length 118
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.61
Mean single sequence MFE -30.53
Consensus MFE -20.83
Energy contribution -21.83
Covariance contribution 1.00
Combinations/Pair 1.20
Mean z-score -1.25
Structure conservation index 0.68
SVM decision value 0.33
SVM RNA-class probability 0.689837
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11493468 118 + 23771897
--AUAUGUUAAAUACUAUGUUGUAUUAUAGGCACACACCUUUAAUGACUUCCUUGGAGGUCAUAAAAUCGGACAAAGAGACAUCGAAUCGCUGACCCCAGCUGGUGCGAUCCAGGGUGAA
--...((((.(((((......)))))...))))..((((((..((((((((....))))))))...((((.((...((....)).....((((....))))..)).))))..)))))).. ( -32.20)
>DroSec_CAF1 8522 118 + 1
--AUAUGUUAAAUACGUUGUUGUAUUAUAUGCACCCACCCUUAAUGACUUCCUUGGAGGUCAUAAAAUCGGCCAACGAGACAUCGAAUCGCUGACCCCAGCUGGUGCGAUCCAGGGUGAA
--...(((..((((((....))))))....)))..((((((..((((((((....))))))))...((((((((.(((....)))....((((....)))))))).))))..)))))).. ( -38.10)
>DroSim_CAF1 3250 118 + 1
--AUAUGUAAAAUAAUUGUAUGUAUUAUAUGCACCCACCUUUAACUACUUCCUUGGAGGUCAUAAAAUCGGCCAACGAGACAUCGAAUCGCUGACCCCAGCUGGUGCGAUCCAGGGUGAA
--.(((((((.(((......))).)))))))(((((((((((((........))))))))......((((((((.(((....)))....((((....)))))))).))))...))))).. ( -32.00)
>DroPer_CAF1 7758 111 + 1
UG--AUUCCGGAUACGGUCC------CC-UCUACACACCCUUUAUAAGAUCCUUGGUGCUCAUGAAGUUGGACAGACUGACGUCGAAGCGUUGGCCCCAGCUGCUGCGCUCCAGGGUGAA
..--...(((....)))...------..-......((((((....(((...)))((.((.((...((((((...(.(..((((....))))..)).))))))..)).)).)))))))).. ( -31.70)
>DroEre_CAF1 4205 119 + 1
UAAUCUGUUAAAUGAUUUUUUGCAUUAC-UGUACCCACCUUUAAUGACUUCCUUGGAGGUCAUGAAAUCGGCCAAAGAGACAUCGAAUCGCUGACCCCAGCUGGUGCGAUCCAGUGUGAA
...(((......(((((((.((((....-))))..........((((((((....))))))))))))))).....))).((((.(.(((((..(((......)))))))).).))))... ( -28.20)
>DroYak_CAF1 4957 110 + 1
UAAUAUGUUAAAUUAUUUUAUGUAUUA----------CCUUUAAUGACAUCCUUGGAGCUCAUAAAAUCCUCCAAAGAAACAUCGAAUCGCUGACCCCAGCUGGUGCGAUCCAGCGUGAA
((((((((.(((....)))))))))))----------..((..(((...((.((((((...........)))))).))..)))..))((((((....))(((((......))))))))). ( -21.00)
>consensus
__AUAUGUUAAAUAAUUUUUUGUAUUAU_UGCACCCACCUUUAAUGACUUCCUUGGAGGUCAUAAAAUCGGCCAAAGAGACAUCGAAUCGCUGACCCCAGCUGGUGCGAUCCAGGGUGAA
...................................((((((..((((((((....))))))))..................((((.(((((((....)))).))).))))..)))))).. (-20.83 = -21.83 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:58 2006