| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,492,221 – 11,492,327 |
| Length | 106 |
| Max. P | 0.630852 |
| Location | 11,492,221 – 11,492,327 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 78.08 |
| Mean single sequence MFE | -38.97 |
| Consensus MFE | -21.84 |
| Energy contribution | -21.90 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.630852 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11492221 106 + 23771897 AUUUUCGCCAAUUCCGAGCCAACAUGCAAUGCGGAGUGGCCAGCUGCGGUUAUGCCACUGCAAGUGGUGCAGCCACGGAGACGAAUCA---CCUAA--GCAGGAUAGGUAA ......((((.(((((.((......))....)))))))))...((((((((..(((((.....)))))..)))).((....)).....---.....--))))......... ( -36.40) >DroPse_CAF1 13560 103 + 1 AUUUCCAGCAGUUCCGGGCCAACAUGCGGUGCGGCGUGGCCAGCUGUUGCUAUGCCUCCG--------GCUGUCCCGAAGAGACUCCCGCCUCCCGGCAGCGCAGAGGUAC .....(((((((....(((((...(((...)))...))))).)))))))...((((((.(--------((((..(((..(((........))).))))))).).)))))). ( -39.00) >DroSec_CAF1 7288 106 + 1 AUUUCCGCCAAUUCCGGGCCAACAUGCAAUGCGGAGUGGCCAGCUGCUCUUAUGCCACGGCAAGUGGUGCAGCCACGGAGGGCAACCA---UCUAA--ACAGGAUAGGUGA .....((((...(((((((((...(((...)))...))))).(((((.((..(((....)))...)).)))))..))))((....))(---(((..--...)))).)))). ( -42.70) >DroSim_CAF1 1185 106 + 1 AUUUCCGCCAAUUCCGGGCCAACAUGCAAUGCGGAGUGGCCAGCUGCUCUUAUGCCACGGCAAGUGGUGCAGCCACGGAGGGCAACCA---UCUAA--ACAGGAUAGGUAA ......(((...(((((((((...(((...)))...))))).(((((.((..(((....)))...)).)))))..)))).))).((((---(((..--...)))).))).. ( -42.40) >DroEre_CAF1 2984 106 + 1 AUUUCCGUCAAUUCCGGGCCAACAUGCAAUGCGGAGUGGCCAGUUGCUCAUAUGCCACUGCAACUGCCACGGCCACGGAGACUAACCA---CCAAA--ACCGGAUAGGUAA ......(((...((((((((....(((...)))..(((((.((((((............))))))))))))))).)))))))..(((.---((...--...))...))).. ( -37.00) >DroYak_CAF1 3647 106 + 1 ACUUCCGUCAGUUCCGGGCCAACAUGCAAUGCGGCGUGGCCAGCUGUACGUAUGCCACUGCAACUGGCGCUGCCACGGAGAGUAGCCA---CCCAA--ACCGGAUGGGUAA ...........((((((((...(((((......)))))(((((.((((.((.....)))))).)))))...))).)))))..((.(((---.((..--...)).))).)). ( -36.30) >consensus AUUUCCGCCAAUUCCGGGCCAACAUGCAAUGCGGAGUGGCCAGCUGCUCUUAUGCCACUGCAAGUGGUGCAGCCACGGAGAGCAACCA___CCUAA__ACAGGAUAGGUAA ....((.((...(((((((((...(((...)))...))))).(((((.....(((....)))......)))))..))))(......)..............))...))... (-21.84 = -21.90 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:57 2006