| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,490,835 – 11,490,931 |
| Length | 96 |
| Max. P | 0.898364 |
| Location | 11,490,835 – 11,490,931 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 89.34 |
| Mean single sequence MFE | -29.27 |
| Consensus MFE | -22.99 |
| Energy contribution | -23.05 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.79 |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.898364 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11490835 96 - 23771897 UACUUUUGGCAUGGCAGGGCCGUACUUGCCGCCGUU------GUCAUUGUCAUAGUUUUCGGAUUUAACAUUUUGGAUUUAUGACAAACAAUCGGCCGCAAC ........((..((((((......))))))((((((------((..(((((((((..((((((........)))))).))))))))))))).)))).))... ( -34.20) >DroSec_CAF1 5902 89 - 1 UACUU-UGGAAUGGCGGGGCCGUACUUGCCG------------UCAUUGUCAUAGUUUUCGGACUUAACAUUUUGGAUUUAUGACAAACAAUCGGCCGCAAC .....-.((.((((((((......)))))))------------)..(((((((((..((((((........)))))).)))))))))........))..... ( -23.30) >DroEre_CAF1 1558 95 - 1 UACUU-UGGCAUGGCAGGGCCGUACUUGCUGCUGUU------GUCAUUGUCAUAGUUUUCGGAUUAAACAUUUUGGAUUUAUGACAAACAGUCGGCCGCAAC .....-..((..((((((......))))))((((((------((..(((((((((..((((((........)))))).))))))))))))).)))).))... ( -29.20) >DroYak_CAF1 2143 101 - 1 UACUU-UGGCAUGGCAGGGCCGUACUUGCUGCCGUUGUCGUUGUCAUUGUCAUAGUUUUCGGAUUUAACAUUUUGGAUUUAUGACAAACAAUCGGGCGCAAC .....-.((((..(((((......)))))))))(((((((((((..(((((((((..((((((........)))))).))))))))))))).))...))))) ( -30.40) >consensus UACUU_UGGCAUGGCAGGGCCGUACUUGCCGCCGUU______GUCAUUGUCAUAGUUUUCGGAUUUAACAUUUUGGAUUUAUGACAAACAAUCGGCCGCAAC .......(((..((((((......))))))................(((((((((..((((((........)))))).))))))))).......)))..... (-22.99 = -23.05 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:49 2006