Locus 3951

Sequence ID 3L_DroMel_CAF1
Location 11,471,981 – 11,472,079
Length 98
Max. P 0.685342
window6150

overview

Window 0

Location 11,471,981 – 11,472,079
Length 98
Sequences 4
Columns 98
Reading direction forward
Mean pairwise identity 97.79
Mean single sequence MFE -20.30
Consensus MFE -20.25
Energy contribution -20.50
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.66
Structure conservation index 1.00
SVM decision value 0.32
SVM RNA-class probability 0.685342
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11471981 98 + 23771897
AGUAUCAAGCCCUUAGGCAAGCGGAUAUGAAUAUGUAUUUUAUGCAAGGGUUAUGCGAAAAGUUCUAUAUAUGAAUGUAAAAUAGAUGGAUAUAUCUA
........(((....)))....(((((((..(((.(((((((((((.......))).....((((.......)))))))))))).)))..))))))). ( -21.00)
>DroSec_CAF1 191522 98 + 1
AGUAUCGAGCCCUUAGGCAAGUGGAUAUGAAUAUGUAUUUUAUGCAAGGGUUAUGCGAAAAGUUCUAUAUAUGAAUGUAAAAUAGAUGGAUAUAUCUA
........(((....)))...((((((((..(((.(((((((((((.......))).....((((.......)))))))))))).)))..)))))))) ( -21.20)
>DroSim_CAF1 205074 98 + 1
AGUAUCAAGCCCUUAGGCAAGUGGAUAUGAAUAUGUAUUUUAUGCAAGGGUUAUGCGAAAAGUUCUAUAUAUGAAUGUAAAAUAGAUGGAUAUAUCUA
........(((....)))...((((((((..(((.(((((((((((.......))).....((((.......)))))))))))).)))..)))))))) ( -21.20)
>DroYak_CAF1 191738 97 + 1
AGUAUCAAGCCCAUAGGCAAGCGGAUAUGAAUAUGUAU-UUAUGCAAGGGUUAUGCGAAAAGUUCUAUAUAUGAAUGUAAAAUAGAUGGAUAUAUCUA
........(((....)))....(((((((..(((.(((-((.((((.......))))....((((.......))))...))))).)))..))))))). ( -17.80)
>consensus
AGUAUCAAGCCCUUAGGCAAGCGGAUAUGAAUAUGUAUUUUAUGCAAGGGUUAUGCGAAAAGUUCUAUAUAUGAAUGUAAAAUAGAUGGAUAUAUCUA
........(((....)))....(((((((..(((.(((((((((((.......))).....((((.......)))))))))))).)))..))))))). (-20.25 = -20.50 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:46 2006