Locus 3950

Sequence ID 3L_DroMel_CAF1
Location 11,467,130 – 11,467,229
Length 99
Max. P 0.613935
window6149

overview

Window 9

Location 11,467,130 – 11,467,229
Length 99
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 77.52
Mean single sequence MFE -24.32
Consensus MFE -7.94
Energy contribution -9.10
Covariance contribution 1.16
Combinations/Pair 1.28
Mean z-score -1.89
Structure conservation index 0.33
SVM decision value 0.16
SVM RNA-class probability 0.613935
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11467130 99 - 23771897
AUGUAAAAUAAGUAGGCAAUUCAUUUUACUGCUUUGAG-GAUUUACAUGCACAGGCAAGUG-----UGCUCUGUUCAUACGUUGUACGUUU-------CAUAUAGAAAGUCA
(((((((..((((((.............))))))....-..)))))))(((((......))-----)))(((((....(((.....)))..-------...)))))...... ( -19.02)
>DroSec_CAF1 186694 99 - 1
AUGUAAAAUAAGUAGGCAAUUCAUUUUACUGAUUUGAG-GGCUUACGUGCAUAGUCAAGCG-----UGCACUGUGCACACAUUGUACAUUU-------CAUAAAGAAAGGCA
((((.......((((((..((((...........))))-.))))))(((((((((((....-----)).)))))))))))))(((...(((-------(.....)))).))) ( -25.90)
>DroSim_CAF1 200248 99 - 1
AUGUAAAAUAAGUAGGCAAUUCAUUUUACUGAUUUGAG-GGCUUACGUGCAUAGUCAAGCG-----UGCACUGUGCACACAUUGUACAUUU-------CAUAAAGAAUGGCA
((((.......((((((..((((...........))))-.))))))(((((((((((....-----)).)))))))))))))(((.(((((-------......)))))))) ( -25.60)
>DroEre_CAF1 198284 101 - 1
AUGUAAAUUAAGUAUGCAAUUCAUUUUACUGCUUUGAC-GGCUUAC----AUAGUCUAGCG-----UGCACUGUGUAUACAGAC-AUAUAUCACGAUGCAUAUAUAAUGGCA
.(((..((((.(((((((..((........(((..(((-.......----...))).)))(-----((...(((((......))-)))...)))))))))))).)))).))) ( -21.20)
>DroYak_CAF1 186964 104 - 1
AUGUAAA-UAAGUAUGCCAUUCAUUUUACUGCUUUGAGAAGCUUAA----AUAGUAAAGGGUGCGGUGCACUGUGUAUACAUAGUACAUUU---UAUAUAUGUAGAAUGGCA
.......-......((((((((.((((((((.((((((...)))))----))))))))).(((..(((.((((((....)))))).)))..---))).......)))))))) ( -29.90)
>consensus
AUGUAAAAUAAGUAGGCAAUUCAUUUUACUGCUUUGAG_GGCUUAC_UGCAUAGUCAAGCG_____UGCACUGUGCAUACAUUGUACAUUU_______CAUAUAGAAUGGCA
(((((......((((((...(((...........)))...))))))(((.(((((...(((.....)))))))).)))......)))))....................... ( -7.94 =  -9.10 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:45 2006