Locus 395

Sequence ID 3L_DroMel_CAF1
Location 1,149,808 – 1,149,905
Length 97
Max. P 0.912088
window580

overview

Window 0

Location 1,149,808 – 1,149,905
Length 97
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 74.55
Mean single sequence MFE -32.18
Consensus MFE -14.16
Energy contribution -16.88
Covariance contribution 2.72
Combinations/Pair 1.09
Mean z-score -2.23
Structure conservation index 0.44
SVM decision value 1.08
SVM RNA-class probability 0.912088
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1149808 97 - 23771897
UGCCUUG-UGGCUGCAGCUCGUAUCUUGUAUCUUGAAUCUGAUGG------AUGCGAAGUGAGAUGCGAGUAGCUGCGGUUGUCCAAUUGACACCA--------------UUUACUCC
.(((...-.))).(((((((((((((..(.((....(((.....)------))..)).)..))))))))...)))))(((.(((.....)))))).--------------........ ( -33.10)
>DroPse_CAF1 41888 75 - 1
----CUGCUGCCUA----CUGC---AUGCUGCAUGCAUCUGAUGG------A----------GAGUCGCUACGCUGCGGUUGCUAAAUUGACACCG--------------U-UACUC-
----..........----.(((---(((...))))))..((((((------.----------....(((......)))(((........))).)))--------------)-))...- ( -14.90)
>DroSec_CAF1 33934 97 - 1
UGCCUUG-UGGCUGCAGCUCGUAUCUUGUAUCUUGUAUCUGAUGG------AUGCGAAGUGAGAUGCGAGUAACUGCGGUUGUCCAAUUGACACCA--------------UUUACUCC
.(((...-.))).(((((((((((((..(...(((((((.....)------)))))).)..)))))))))...))))(((.(((.....)))))).--------------........ ( -36.30)
>DroSim_CAF1 31752 97 - 1
UGCCUUG-UGGCUGCAGCUCGUAUCUUGUAUCUUGUAUCUGAUGG------AUGCGAAGUGAGAUGCGAGUAGCUGCGGUUGUCCAAUUGACACCA--------------UUUACUCC
.(((...-.))).(((((((((((((..(...(((((((.....)------)))))).)..))))))))...)))))(((.(((.....)))))).--------------........ ( -37.10)
>DroEre_CAF1 31921 96 - 1
UGCCUUG-UAGCUGCCUCUCGUAUCUUGU-------AUCUGAUGGAUGCGGAUGCGAAGUGAGAUGCGAGUGGCUGCGGUUGUCCAAUUGACACCA--------------UUUACUCC
......(-((((.(((.((((((((((((-------(((((.......))))))).....)))))))))).))).))(((.(((.....)))))).--------------..)))... ( -36.80)
>DroYak_CAF1 34979 111 - 1
UGCCUUG-UAGCUGCAUCUCGUAUCUUGUAUCUUGUAUCUGAUGG------AUGCGAAGUGAGAUGCGUGUGGCUGCGGUUGUCCAAUUGACACCAUUUACCAUUCACCAUUUACUCC
......(-((((..((...(((((((..(...(((((((.....)------)))))).)..)))))))))..)))))(((.(((.....))))))....................... ( -34.90)
>consensus
UGCCUUG_UGGCUGCAGCUCGUAUCUUGUAUCUUGUAUCUGAUGG______AUGCGAAGUGAGAUGCGAGUAGCUGCGGUUGUCCAAUUGACACCA______________UUUACUCC
..........((.((..(((((((((..(.((.......................)).)..)))))))))..)).))(((.(((.....))))))....................... (-14.16 = -16.88 +   2.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:50 2006