Locus 3945

Sequence ID 3L_DroMel_CAF1
Location 11,439,159 – 11,439,275
Length 116
Max. P 0.964824
window6141

overview

Window 1

Location 11,439,159 – 11,439,275
Length 116
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.45
Mean single sequence MFE -44.88
Consensus MFE -35.08
Energy contribution -34.56
Covariance contribution -0.52
Combinations/Pair 1.19
Mean z-score -2.35
Structure conservation index 0.78
SVM decision value 1.57
SVM RNA-class probability 0.964824
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11439159 116 + 23771897
AUCGUCUGGGCGCCGUAAUAGCGAUCCAUGGGCACCUCCAUGGGUCCCAGGGUGUCGCUCUCUUGGCGGGUCUCAACCUUCUUGGUGGAGCUCAUCCUGGU-AAAAUCAGAUC---UAUU
...((((((((.........))((((((((((....))))))))))((((((((..(((((((.((.((((....)))).)).)).))))).)))))))).-....)))))).---.... ( -46.60)
>DroSec_CAF1 158621 119 + 1
AUCGUCUGGGCGCCGUAAUAGCGAUCCAUGGGCACCUCCAUGGGUCCCAGGGUGUCGCUCUCUUGGCGCGUCUCAACCUUCUUGUUGGAGCUCAUCCUGGU-AAAAUCAGAUAUUAUAUU
...((((((((((((..(.((((((((.((((.((((....)))))))).)).)))))).)..))))))((..((((......))))..))..........-....))))))........ ( -45.30)
>DroSim_CAF1 169840 119 + 1
AUCGUCUGGGCGCCGUAAUAGCGAUCCAUGGGCACCUCCAUGGGGCCCAGGGUGUCGCUCUCUUGGCGCGUCUCAACCUUCUUGUUGGAGCUCAUCCUGGU-AAAAUCAGAUAUUAUAUU
...((((((((((((..(.((((((((.(((((.(((....)))))))).)).)))))).)..))))))((..((((......))))..))..........-....))))))........ ( -47.40)
>DroEre_CAF1 169836 120 + 1
AUCGUCUGAGCGCCGUAAUAGCGAUCCAUGGGCACAUUCAUGGGUCCCAGGGUGUCGCUCUCUUGACGGGUCUCAUCCUUCUUGCUGGGGUUCAUCCUGGUAGAAAUCGGGUACUAUAUU
......(((((.((((((..(.((((((((((....)))))))))).)((((((..((((.......))))..))))))..)))).)).))))).((((((....))))))......... ( -39.30)
>DroYak_CAF1 156996 119 + 1
AUCGUCUGUGCGCCGUAGUAGCGAUCCAUGGGCACCUCCAUGGGUCCCAGGGUGUCGCUCUCCUGGCGCGUCUCCACCUUCUUGCUGGUGCUCAUCCUGGU-GAGAUCAGGUAUUUUACU
.........((((((.((.((((((((.((((.((((....)))))))).)).))))))))..))))))......(((((((..(..(........)..).-.)))..))))........ ( -45.80)
>consensus
AUCGUCUGGGCGCCGUAAUAGCGAUCCAUGGGCACCUCCAUGGGUCCCAGGGUGUCGCUCUCUUGGCGCGUCUCAACCUUCUUGCUGGAGCUCAUCCUGGU_AAAAUCAGAUAUUAUAUU
...((((((((.........))((((((((((....))))))))))((((((((..((((((..((.(.(......)).))..)..))))).))))))))......))))))........ (-35.08 = -34.56 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:38 2006