| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,419,374 – 11,419,491 |
| Length | 117 |
| Max. P | 0.653609 |
| Location | 11,419,374 – 11,419,491 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 79.26 |
| Mean single sequence MFE | -38.04 |
| Consensus MFE | -24.15 |
| Energy contribution | -25.52 |
| Covariance contribution | 1.37 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.653609 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11419374 117 + 23771897 AGAACCAGCUGCCAGCGUUACCGUGAACGAUUGCGUUCGAACCGCCUAUCACAGCUCCUCCAUGGACUUUCCAUCGUGGCGACGGUAACACUGGGGGUUGUCCUGAUGUUCUUCCUU ((((((((((.((((.(((((((((((((....)))))....((((......((.(((.....))))).........)))))))))))).)))).))))).......)))))..... ( -43.27) >DroSec_CAF1 139152 117 + 1 AGAACCAGCUGCCAGCGUUAUCGUGAACGACUGCGUUCGAACCGCCUAUCACAGCUCCUCCAUGGACUUUCCAUCGUGAUGACGGUAGCACUGGGGGUUGUCCUGAUAUUCUUCCUC .....(((((.((((.(((((((((((((....)))))........((((((((.(((.....))))).......)))))))))))))).)))).)))))................. ( -37.01) >DroSim_CAF1 150599 117 + 1 AGAACCAGCUGCCAGCGUUAUCGUGAACGACUGCGUUCGAACCGCCUAUCACAGCUCCUUCACGGACUUUCCAUCGUGGUGACGAUAGCACUGGGGGUUAUCCUAAUAUUCUUCCUC ......((((.((((.(((((((((((((....)))))..(((((.......((.(((.....))))).......))))).)))))))).)))).)))).................. ( -36.74) >DroEre_CAF1 146663 117 + 1 AGAACCAGCUGCCAGCGAUACCGUGAACGACUGCGCUCCAAACGCCUACAACAGCUCCUCCAUGGACUUUCCAUCAUGGCAACGGUGGCGGUGGUGGUUGUCCUGAUCCUCUUCCUC .....((((..(((.((.((((((........(((.......)))........(((.....((((.....))))...))).)))))).)).)))..))))................. ( -32.70) >DroYak_CAF1 137555 117 + 1 AGAACCAGCUGCCAUCGUUACCGUGAACGACUGCGUUCCAAUCGCCUCUCACAGCUCCUCCAUGGACUUUCCAUCAUGGCAACGUUGGCAGUGGUGGUCGUUCUGAUGCUCUUCCUC .((.((((((((((.((((.((((((..((..(((.......)))...))..((.(((.....))))).....)))))).)))).)))))))..))))).................. ( -35.10) >DroAna_CAF1 130655 117 + 1 AACACCAGCUGCCGGCGGCACCGGGAACGUCUUCGUUCCACCCGCCAGACCCACAUCCUCCAGGGCCUGACCGUCCUGGCAGCCGCAGUCAUUAUCCUGGCCCUGUUGCUGUUUCUG ((((.((((.((((((((.....((((((....))))))..))))).(((.......(((((((((......))))))).)).....)))........)))...)))).)))).... ( -43.40) >consensus AGAACCAGCUGCCAGCGUUACCGUGAACGACUGCGUUCCAACCGCCUAUCACAGCUCCUCCAUGGACUUUCCAUCGUGGCAACGGUAGCACUGGGGGUUGUCCUGAUGCUCUUCCUC .....(((((.((((.(((((((((((((....))))).....................((((((........))))))..)))))))).)))).)))))................. (-24.15 = -25.52 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:26 2006