Locus 3935

Sequence ID 3L_DroMel_CAF1
Location 11,408,007 – 11,408,127
Length 120
Max. P 0.521295
window6127

overview

Window 7

Location 11,408,007 – 11,408,127
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.75
Mean single sequence MFE -31.14
Consensus MFE -23.22
Energy contribution -23.50
Covariance contribution 0.28
Combinations/Pair 1.07
Mean z-score -1.65
Structure conservation index 0.75
SVM decision value -0.02
SVM RNA-class probability 0.521295
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11408007 120 - 23771897
GUUUGCUGCAAAGGCAGAUGGGUAACAGCCCAUUUCUGUCAAUCACUCAUUUGUGUUUUCUUAAGGCGGUCUGGUUGUAAACAUUUCUAUUCUUCCGGUUGUAUGCCAUUAUUAGCAAAU
((((((((....(((((((((((....)))))..))))))...(((......))).........((((..((((..(((........)))....)))).....)))).....)))))))) ( -32.40)
>DroSec_CAF1 128085 120 - 1
GUUUGCUGCAAAGGCAGAUGGGUAACAGCCCAAUUCUGUCAUUCACUCGUUUGUGUUUUCUAAAGGCGGUCUAGUUGUAAACAUUUAUAUUCUUCCAGUUGUAUGUCAUUAUUAGCAAAU
(((((((((...(((((((((((....)))))..))))))...(((......)))..........))((...((.(((((....)))))..)).)).................))))))) ( -27.40)
>DroSim_CAF1 140717 120 - 1
GUUUGCUGCAAAGGCAGAUGGGUAACAGCCCAUUUCUGUCAUUCAGUCUUUUGUGUUUUCUAAAGGCGGUCUGGUUGUAAACAUUUCUAUUCUUCCGGUUGUAUGCCAUUAUUAGCAAAU
((((((((....(((((((((((....)))))..))))))........................((((..((((..(((........)))....)))).....)))).....)))))))) ( -31.20)
>DroEre_CAF1 135324 118 - 1
GUUUGCUGCAAAGGCAGAUGGGUAACAGCCCAUUUCUGUCAUUCA-UCGUUUGUGUUUUCUAAAGGAUGCC-UGUUGUAAACAUUUCUAUUCUGCUGGUUGUAUGCCUUUAUUGGCAAAU
((((((.(((..(((((((((((....)))))..))))))...((-((.((((.......)))).))))..-))).))))))..........(((.....)))((((......))))... ( -33.70)
>DroYak_CAF1 126165 120 - 1
GUUUGCUGCAAAGGCAGAUGGGUAACAGCCCAUUUCUGUCAUUCAGUCGUUUGUGUUCUCUAAAGGCGGUCUUGUUGUGUACAUUUCUAUUCUUCUGGUUGUAUGCUAUUAUUGGCAAAU
(((((((((((.(((((((((((....)))))..))))))......((((((...........))))))..)))).(((((((...(((......))).))))))).......))))))) ( -31.00)
>consensus
GUUUGCUGCAAAGGCAGAUGGGUAACAGCCCAUUUCUGUCAUUCACUCGUUUGUGUUUUCUAAAGGCGGUCUGGUUGUAAACAUUUCUAUUCUUCCGGUUGUAUGCCAUUAUUAGCAAAU
((((((.((...(((((((((((....)))))..))))))..........((((.((.....)).))))....)).)))))).....................(((........)))... (-23.22 = -23.50 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:24 2006