| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,407,353 – 11,407,459 |
| Length | 106 |
| Max. P | 0.539058 |
| Location | 11,407,353 – 11,407,459 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.82 |
| Mean single sequence MFE | -33.48 |
| Consensus MFE | -25.40 |
| Energy contribution | -26.78 |
| Covariance contribution | 1.38 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.539058 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11407353 106 + 23771897 CCACGAGGAGUACAAUCAAUCAGACCAAUUAGUUUUAAUGGCCCAUUGCCCAGCGGAGU-------------CAGCAAUUAAAGCCAGUUCUCGGCCAAUGCAAUU-GAGCUCCUUUUGC .((.(((((((.((((..((..(.((((((.(((((((((((.....)))..((.....-------------..)).)))))))).))))...)))..))...)))-).))))))).)). ( -24.20) >DroSec_CAF1 127434 120 + 1 CCACGAAGAGCUCAAUCAAUCAGGCCAAUUAGUUUUAAUGGCCCAUUGCCCAGCGGAGUCGGCACGUCGUCUCAGCAAUUAAGGCCAGUUCCCAGCCAAUGCAAUUGGAGCUCCUUCUGC ....(((((((((.........(((((...........))))).(((((...((.(((.(((....))).))).))......(((.........)))...)))))..))))).))))... ( -36.10) >DroSim_CAF1 140092 120 + 1 CCACGAGGAGCUCAAUCAAUCAGACCAAUUAGUUUUAAUGGCCCAUUGCCCAGCGGAGUCGGCACGUCGUCUCAGCAAUUAAAGCCAGUUCCCAGCCAAUGCAAUUGGAGCUCCUUCUGC .((.(((((((((..((.....)).(((((.(((((((((((.....)))..((.(((.(((....))).))).)).)))))))).........((....)))))))))))))))).)). ( -36.60) >DroEre_CAF1 134592 120 + 1 CCACGAGGAGCUCAAUCAAUCAGGCCAAUUAGUUUUAAUGGCCCAUUGCCCAGCGGAGUCGGCAAGGCGUCUCAGCAAUUAAAGCCAGUUAUCCGCCAAUGCAAUUGCUGCUCCUUCAGC ....(((((((.(((.......(((((...........)))))..((((...(((((..((((...((......)).......))).)...)))))....)))))))..))))))).... ( -35.10) >DroYak_CAF1 125408 115 + 1 CCACGAGGAGCUCAAUCAAUCAGACCAAUUAGUUUUAAUGGCCCAUUGCCCAGCGGAGUCGGCA-GACGUCUCAGCAAUUAAAGCCAGUUUUCCGCCAA----AUUGGAGCUCCUUCAAC ....(((((((((..................(((((((((((.....)))..((.(((.((...-..)).))).)).))))))))((((((......))----))))))))))))).... ( -35.40) >consensus CCACGAGGAGCUCAAUCAAUCAGACCAAUUAGUUUUAAUGGCCCAUUGCCCAGCGGAGUCGGCA_GUCGUCUCAGCAAUUAAAGCCAGUUCUCAGCCAAUGCAAUUGGAGCUCCUUCUGC ....(((((((((.............((((.(((((((((((.....)))..((.(((.((......)).))).)).)))))))).))))....((....)).....))))))))).... (-25.40 = -26.78 + 1.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:23 2006