Locus 3931

Sequence ID 3L_DroMel_CAF1
Location 11,405,474 – 11,405,594
Length 120
Max. P 0.866244
window6120

overview

Window 0

Location 11,405,474 – 11,405,594
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.25
Mean single sequence MFE -28.02
Consensus MFE -24.26
Energy contribution -24.14
Covariance contribution -0.12
Combinations/Pair 1.07
Mean z-score -1.49
Structure conservation index 0.87
SVM decision value 0.85
SVM RNA-class probability 0.866244
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11405474 120 + 23771897
UAUAGUGGUUACGCCCAUGUUGGCAUUAAAAGGCGGUCUGUAAUAAAGAAAAUUGUACAGCAUGUCAAUAACGAACAUAUGCCCUACGAGAAAUAUUGGCAACAUGGAAUAGCUAAAUGA
.....((((((...((((((((.((.((........(((.......)))...(((((..((((((...........))))))..)))))....)).)).))))))))..))))))..... ( -27.30)
>DroSec_CAF1 125612 120 + 1
UAUAGUGGGUACGCCCAUGUUGGCAUUAAAAGGCGGUCUGUAAUAAAGAAAAUUGUACAGCAUGUCAAUAACGAACAUAUGCCCUACGAGAAAUAUUGGCAACAUGGAAUUACUAAAUGA
..((((((......((((((((.((.((........(((.......)))...(((((..((((((...........))))))..)))))....)).)).))))))))..))))))..... ( -26.10)
>DroSim_CAF1 138228 120 + 1
UAUAGUGGGUACGCCCAUGUUGGCAUUAAAAGGCGGUCUGUAAUAAAGAAAAUUGUACAGCAUGUCAAUAACGAACAUAUGCCCUACGAGAAAUAUUGGCAACAUGGAAUUACUAACUGA
..((((.((((...((((((((.((.((........(((.......)))...(((((..((((((...........))))))..)))))....)).)).))))))))...)))).)))). ( -29.40)
>DroEre_CAF1 132668 119 + 1
CAUUGUGGGCACGCCCAUGUGGGCAUUAAAAGGCGGUCUGUAAUAAAGAAAAUUGUACAGCAUGUCAAUAACGAACAUAUGCCCUAUGAGAAAUAUUGGCAACAUGGAAUAC-CAAAUGA
(((...(((((.((((....)))).......((((..(((((...((.....)).)))))..)))).............))))).)))........((....))(((....)-))..... ( -29.30)
>DroYak_CAF1 123483 120 + 1
CAUUGUGGGCACGCCCAUGUUGGCAUUAAAUGGCGGUCUGUAAUAAAGAAAAUUGUACAGCAUGUCAAUAACGAACAUAUGCCCUACGAGAAAUAUUGGCAACGUGGAAUACGCAAAUGA
..(((((((((.(((......)))......(((((..(((((...((.....)).)))))..)))))............))))).))))........(....)(((.....)))...... ( -28.00)
>consensus
UAUAGUGGGUACGCCCAUGUUGGCAUUAAAAGGCGGUCUGUAAUAAAGAAAAUUGUACAGCAUGUCAAUAACGAACAUAUGCCCUACGAGAAAUAUUGGCAACAUGGAAUAACUAAAUGA
....(((....)))((((((((.((.((........(((.......)))...(((((..((((((...........))))))..)))))....)).)).))))))))............. (-24.26 = -24.14 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:17 2006