| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,132,560 – 1,132,651 |
| Length | 91 |
| Max. P | 0.976375 |
| Location | 1,132,560 – 1,132,651 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 72.96 |
| Mean single sequence MFE | -19.11 |
| Consensus MFE | -16.36 |
| Energy contribution | -16.05 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.86 |
| SVM decision value | 1.77 |
| SVM RNA-class probability | 0.976375 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1132560 91 - 23771897 GGUGCCCUUCCU-CCACUUUGCC---CCCACUUUACCACCUUA--------CCCCUUUGGCAGCAUUUCAGCUGCAUUUGCAGUUGCAGUCGCCGCAGUUUUU ((((........-..........---..........))))...--------...((.((((.((....(((((((....)))))))..)).)))).))..... ( -18.69) >DroSec_CAF1 25854 94 - 1 GGCGCCCUUCCC-CCACUUGCCCCUCCCCCCUCUGCACCCUAA--------CCCCUUUAGCAGCAUUUCAGCUGCAUUUGCAGUUGCAGUCGCCGCAGUUUCU ((((........-.....))))..........((((...((((--------.....))))..(((((.(((((((....))))))).))).)).))))..... ( -20.22) >DroSim_CAF1 23670 94 - 1 GGCGCCCUUCCC-CCACUUGCCCCCUCCCCCCUUACCACCUAA--------CCCCUUUAGCAGCAUUUCAGCUGCAUUUGCAGUUGCAGUCGCCGCAGUUUUU ((((........-.....)))).....................--------........((.(((((.(((((((....))))))).))).)).))....... ( -18.82) >DroYak_CAF1 26574 85 - 1 GGCUACCCCCUCCCCAU-----C---CCCCG----UCACCCAAACCCUUUGG------AGCAGCAUUUCAGAUGCAUUUGCCGUUGCAGUGGCCGCAGUUUUU ((((((...........-----.---.....----....((((.....))))------.(((((....((((....))))..))))).))))))......... ( -18.70) >consensus GGCGCCCUUCCC_CCACUUGCCC___CCCCCUUUACCACCUAA________CCCCUUUAGCAGCAUUUCAGCUGCAUUUGCAGUUGCAGUCGCCGCAGUUUUU ((((.......................................................(((((......)))))..((((....)))).))))......... (-16.36 = -16.05 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:47 2006