Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 11,395,424 – 11,395,519 |
Length | 95 |
Max. P | 0.819458 |
Location | 11,395,424 – 11,395,519 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 72.54 |
Mean single sequence MFE | -18.29 |
Consensus MFE | -13.34 |
Energy contribution | -13.15 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.06 |
Mean z-score | -1.42 |
Structure conservation index | 0.73 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.819458 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11395424 95 + 23771897 CAUUGCCACCUUCCGCACCGACCACUGGAAUUCAAAUUUCCAGAACUUUAAAAAAAAAAAACCAUUCAAAGUU---------GAAAAAGAUGU----------------UGGCAGAUUGG ..((((((.(.((...........((((((.......))))))((((((..................))))))---------......)).).----------------))))))..... ( -17.07) >DroSec_CAF1 115796 82 + 1 CAUUGCCA-------------CCACUGGAAUUAAAAUUUCCAGAACUUAAAAAAAAAUAAACGAUUCAAAGUU---------GAAAAAGAUGU----------------UGGCAGAUUGG ..((((((-------------.((((((((.......))))))..................((((.....)))---------).......)).----------------))))))..... ( -17.10) >DroSim_CAF1 127864 90 + 1 CAUUGCCACCUUCCUCGCCGACCACUGGAAUUCAAAUUUCCAGAACUUAAAAAA-----AACGAUUCAAAGUU---------GAAAAAGAUGU----------------UGGCAGAUUGG ........((...((.((((((..((((((.......))))))...........-----..((((.....)))---------)........))----------------))))))...)) ( -19.00) >DroYak_CAF1 111433 116 + 1 CAUUGCCUCCUUUUGCGCCGACCACUGGAAUUCAAAUUUCUAGAACUUACAAAA----ACGCCAUUCAAAGUUCAAAGUUAAUAAAAAGACGUGGCUUUCGUCCAUUCUUGGCAGCUUGG ..(((((......((.(.((((((((((((.......)))))((((((......----..........)))))).................))))...))).))).....)))))..... ( -19.99) >consensus CAUUGCCACCUUCCGCGCCGACCACUGGAAUUCAAAUUUCCAGAACUUAAAAAA____AAACCAUUCAAAGUU_________GAAAAAGAUGU________________UGGCAGAUUGG ..(((((.................((((((.......))))))(((((....................))))).....................................)))))..... (-13.34 = -13.15 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:13 2006