Locus 3927

Sequence ID 3L_DroMel_CAF1
Location 11,390,075 – 11,390,169
Length 94
Max. P 0.998360
window6114

overview

Window 4

Location 11,390,075 – 11,390,169
Length 94
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 95.26
Mean single sequence MFE -27.72
Consensus MFE -25.36
Energy contribution -25.36
Covariance contribution -0.00
Combinations/Pair 1.07
Mean z-score -2.09
Structure conservation index 0.91
SVM decision value 3.08
SVM RNA-class probability 0.998360
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11390075 94 + 23771897
UUAGAAUUGCCAAUGCUGGCCAAGUUAGCAGUUGGCAUAUUAAGUAUACGUUCAA-AAGCUUCCAUCCAUCUGGAUCGAGUUACUUGGGCACCCA
.......(((((((((((((...))))))).))))))............((((((-.((((.(.((((....)))).)))))..))))))..... ( -26.80)
>DroSec_CAF1 109995 95 + 1
UUAGAAUUGCCAAUGCUGGCCAAGUUAGCAGUUGGCAUAUUAAGUAUACGUUCAAAAAGCUUCCAUCCAUCUGGAUCGAGUUACUUGGGCACCAG
.......(((((((((((((...))))))).))))))............((((((..((((.(.((((....)))).)))))..))))))..... ( -27.90)
>DroSim_CAF1 122537 95 + 1
UUAGAAUUGCCAAUGCUGGCCAAGUUAGCAGUUGGCAUAUUAAGUAUACGUUCAAAAAGCUUCCAUCCAUCUGGAUCGAGUUACUUGGGCACCCA
.......(((((((((((((...))))))).))))))............((((((..((((.(.((((....)))).)))))..))))))..... ( -27.90)
>DroEre_CAF1 116933 95 + 1
UUAGAAUUGCCAAUGCUGGCCAAGUUAGCAGUUGGCAUAUUAAGUAUACGUUCAAAAGGCUUGCAUCCGUCGGGACCGAGUUACUUGGGCACCCA
.......(((((((((((((...))))))).))))))............((((((..((((((..(((....))).))))))..))))))..... ( -28.70)
>DroYak_CAF1 105767 95 + 1
UUAGAAUUGCCAAAGCUGGCCAAGUUAGCAGUUGGCAUAUUAAGUAUACGUUCAAGAGGUUUCCAUCCAUCUGGAUCGAGUUACUUGGGCACCCA
.......((((((.((((((...))))))..))))))............(((((((....(((.((((....)))).)))...)))))))..... ( -27.30)
>consensus
UUAGAAUUGCCAAUGCUGGCCAAGUUAGCAGUUGGCAUAUUAAGUAUACGUUCAAAAAGCUUCCAUCCAUCUGGAUCGAGUUACUUGGGCACCCA
.......(((((((((((((...))))))).))))))............((((((..(((((..((((....)))).)))))..))))))..... (-25.36 = -25.36 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:12 2006