| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,385,172 – 11,385,291 |
| Length | 119 |
| Max. P | 0.730198 |
| Location | 11,385,172 – 11,385,291 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.11 |
| Mean single sequence MFE | -28.40 |
| Consensus MFE | -25.20 |
| Energy contribution | -25.08 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.730198 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11385172 119 - 23771897 UCUCCCCACCCAACUAAUACUCCACCUUCUUGGCCAUACUGCUAAUUAGGCAUUUGCAUAUCAACUUGGGCCACAGAUGUCCGGGGCCAUAACAUCAAAGUUAAGUGUCCCAGGCGGUA- .......................(((.((((((((....((((.....))))....((........))))))).))).(((.((((((.((((......)))).).))))).)))))).- ( -30.60) >DroSim_CAF1 117588 112 - 1 C-------CCCAGCAAAUUCUCCACCUUCUUGGCCAUACUGCUAAUUAGGCAUUUGCAUACCAACUUGGGCCACAGAUGUCCGGGGCCAUAACAUCAAAGUUAAGUGUCCCAGGCGGUA- .-------....((((((......(((..(((((......)))))..))).)))))).((((.....((((.......))))((((((.((((......)))).).)))))....))))- ( -30.90) >DroEre_CAF1 111836 94 - 1 C-------CCC-------UCCU-----------GUACACUGCUAAUUAGGCAUUUGCAUAUCAACUUGGGCCACAGAUGUCCGGGGCCAUAACAUCAAAGUUAAGUGUCCCAGGCGGCA- .-------.((-------.(((-----------(.(((((........(((..(((.....)))(((((((.......)))))))))).((((......)))))))))..)))).))..- ( -25.90) >DroYak_CAF1 100630 104 - 1 C-------CCC-------UCCCCACC-CCUCGACCACACUGCUAAUUAGGCAUUUGCAUAUCAAGUUGGGCCACAGAUGUCCGGGGCCAUAACAUCAAAGUUAAGUGUCCCAGGCGGCA- .-------...-------........-...........(((((.....((((((((....((.....))....)))))))).((((((.((((......)))).).))))).)))))..- ( -25.30) >DroAna_CAF1 96762 99 - 1 C-------CACA---------CCGC-----CAGCCCCACUGCUAAUUAGCCAUUUGCAUAUCAACUUGGGCCACAGAUGUCCGGGACCAUAACAUCAAAGUUAAGUGUCCCUGGCGGCCG .-------....---------((((-----((((((....(((....)))...(((.....)))...))))...........((((((.((((......)))).).)))))))))))... ( -29.30) >consensus C_______CCCA______UCCCCACC__CUCGGCCACACUGCUAAUUAGGCAUUUGCAUAUCAACUUGGGCCACAGAUGUCCGGGGCCAUAACAUCAAAGUUAAGUGUCCCAGGCGGCA_ ......................................(((((.....((((((((....((.....))....)))))))).((((((.((((......)))).).))))).)))))... (-25.20 = -25.08 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:11 2006