Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 11,382,097 – 11,382,189 |
Length | 92 |
Max. P | 0.510135 |
Location | 11,382,097 – 11,382,189 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 92.20 |
Mean single sequence MFE | -23.70 |
Consensus MFE | -19.46 |
Energy contribution | -19.50 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.11 |
Mean z-score | -1.29 |
Structure conservation index | 0.82 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.510135 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11382097 92 - 23771897 CGCCAUUCAAAACAAGGAAAAAUUAUGAUAAGUGGUUGCCAGUUGGAGGCAAUGUAUCAACUGCCAUCUGGCGGAAAAGCUGAGCUAAGUAG---- .(((.(((((.....((...((((((.....)))))).))..))))))))..........(((((....)))))....(((......)))..---- ( -21.10) >DroSec_CAF1 102057 96 - 1 CGCCAUCCAAAACAAGGAAAAAUUAUGAUAAGUGGUUGCCAGUUGGAGGCAAUGCAUCAACUGCCAUCUGGCGCAAAAGCUGAGCUAAGUAGUCAG .(((.(((((.....((...((((((.....)))))).))..))))))))...((.(((...(((....)))((....)))))))........... ( -23.50) >DroSim_CAF1 114534 92 - 1 CGCCAUCCAAAACAAGGAAAAAUUAUGAUAAGUGGUUGCCAGUUGGAGGCAAUGCAUCAACUGCCAUCUGGCGGAAAAGCUGAGCUAAGUAG---- .(((.(((((.....((...((((((.....)))))).))..))))))))..(((.....(((((....)))))...(((...)))..))).---- ( -24.60) >DroEre_CAF1 108767 92 - 1 CGCCAGCUAAAAGCUGGGAAAAUUAUGAUAAGUGGUUGCCAGUUGGAGGCAAUGCAUCAACUGCCAUCUGGCGGAAAAGCUGAGCUAAGUAG---- .(((((((...((((((...((((((.....)))))).)))))).((.((...)).))..(((((....)))))...))))).)).......---- ( -27.50) >DroYak_CAF1 97477 92 - 1 CGCCUUCUAAAAACAGGGAAAAUUAUGAUAAGUGCUUGCCAGUUGGAGGCAAUGCAUCAACUGCCAUCUGGCGGAAAAGCAGAGCUAAGUAG---- .((((.((.......................(((((((((.......))))).))))...(((((....)))))...)).)).)).......---- ( -21.80) >consensus CGCCAUCCAAAACAAGGAAAAAUUAUGAUAAGUGGUUGCCAGUUGGAGGCAAUGCAUCAACUGCCAUCUGGCGGAAAAGCUGAGCUAAGUAG____ .(((.(((((.....((...((((((.....)))))).))..))))))))..(((.....(((((....)))))...(((...)))..)))..... (-19.46 = -19.50 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:10 2006