Locus 3923

Sequence ID 3L_DroMel_CAF1
Location 11,375,862 – 11,375,976
Length 114
Max. P 0.978536
window6108

overview

Window 8

Location 11,375,862 – 11,375,976
Length 114
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 92.45
Mean single sequence MFE -24.20
Consensus MFE -22.67
Energy contribution -23.03
Covariance contribution 0.36
Combinations/Pair 1.04
Mean z-score -1.61
Structure conservation index 0.94
SVM decision value 1.82
SVM RNA-class probability 0.978536
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11375862 114 + 23771897
---AAUAGUGACAGGU-CGGUCAGUGGAAAAUAUGAAUACCACUUGAGCAUGUUAACCCCGAAAGGCGUUUAUAAAACUGUCCAAGGCUAUUAAUAUCAA--AAUUCCGCACACAGAGCA
---(((((((((((..-.(.(((((((............)))).))).).(((.(((.((....)).))).)))...)))))....))))))........--......((.......)). ( -25.50)
>DroVir_CAF1 43513 114 + 1
---AAUAGUGACAGGU-CGGUCAGUGGAAAAUAUGAAUACCACUUGAGCAUGUUAACCCCGAAAGGCGUUUAUAAAACUGUCCAAAGCUAUUAAUAUCAA--AAUUCCGCACACACACAC
---(((((((((((..-.(.(((((((............)))).))).).(((.(((.((....)).))).)))...)))))....))))))........--.................. ( -24.50)
>DroPse_CAF1 108904 114 + 1
---CAUAGUGACAGGU-CGGUCAGUGGAAAAUAUGAAUACCACUUGAGCAUGUUAACCCCGAAAGGCGUUUAUAAAACUGUCCAAAGCUAUUAAUAUCAA--AAUUCUGCACACACACAC
---.((((((((((..-.(.(((((((............)))).))).).(((.(((.((....)).))).)))...)))))....))))).........--.................. ( -23.30)
>DroGri_CAF1 86013 113 + 1
AAUAAUAGUGACAGGU-CGGUCAGUGGAAAAUAUGAAUACCACUUGAGCAUGUUAACCCCGAAAGGCGUUUAUAAAACUGUCCAAAGCUAUUAAUAUCAA--AAUUCCGCACACAG----
..((((((((((((..-.(.(((((((............)))).))).).(((.(((.((....)).))).)))...)))))....))))))).......--..............---- ( -26.20)
>DroWil_CAF1 47196 120 + 1
AGUAGAAGUGACAGGUCCGGUCAGUGGAAAAUAUGAAUACCACUUGAACAUGUUAACCCCGAAAGGCCUUUAUAAAACUGUCCAAAGCUAUUAAUAUCAAAAAAUUCUGCACACACAAAU
.(((((((.((....)))((.((((((..((((((.............))))))..))((....))..........)))).)).....................)))))).......... ( -21.22)
>DroMoj_CAF1 83008 110 + 1
---AAUAGUGACAGGU-CGGUCAGUGGAAAAUAUGAAUACCACUUGAGCAUGUUAACCCCGAAAGGCGUUUAUAAAACUGUCCAAAGCUAUUAAUAUCAA--AAUUCCGCACACAG----
---(((((((((((..-.(.(((((((............)))).))).).(((.(((.((....)).))).)))...)))))....))))))........--..............---- ( -24.50)
>consensus
___AAUAGUGACAGGU_CGGUCAGUGGAAAAUAUGAAUACCACUUGAGCAUGUUAACCCCGAAAGGCGUUUAUAAAACUGUCCAAAGCUAUUAAUAUCAA__AAUUCCGCACACACA_A_
...(((((((((((....(.(((((((............)))).))).).(((.(((.((....)).))).)))...)))))....))))))............................ (-22.67 = -23.03 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:06 2006