Locus 3922

Sequence ID 3L_DroMel_CAF1
Location 11,374,859 – 11,374,959
Length 100
Max. P 0.643679
window6107

overview

Window 7

Location 11,374,859 – 11,374,959
Length 100
Sequences 4
Columns 104
Reading direction reverse
Mean pairwise identity 94.61
Mean single sequence MFE -18.00
Consensus MFE -14.43
Energy contribution -14.68
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -2.01
Structure conservation index 0.80
SVM decision value 0.23
SVM RNA-class probability 0.643679
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11374859 100 - 23771897
CCUUCCUUCCGGCCUUCUCGCCCCGCCCCU----UCACUCUGCCACUUCCUUGCGCGUCCUGCGCAGCAUAAAUUACGCAAUUCACUUUGGCGUCCUUUUUUCA
..........(((......))).((((...----......(((........((((((.....))).)))........))).........))))........... ( -18.46)
>DroSec_CAF1 95075 100 - 1
CCUUCCUUCCGGCCUUCUCGCCCCGCCCCU----UCACUCUGCCACUUCCUUGCGCGUCCUGCGCAGCAUAAAUUACGCAAUUCACUUUGGCGUCCUUUUUUCA
..........(((......))).((((...----......(((........((((((.....))).)))........))).........))))........... ( -18.46)
>DroSim_CAF1 105026 100 - 1
CCUUCCUUCCGGCCUUCUCGCCCCGCCCCU----UCACUCUGCCACUUCCUUGCGCGUCCUGCGCAGCAUAAAUUACGCAAUUCACUUUGGCGUCCUUUUUUCA
..........(((......))).((((...----......(((........((((((.....))).)))........))).........))))........... ( -18.46)
>DroYak_CAF1 89984 104 - 1
CCUUCCUUCCUGCCAGCUCACCCCGCUCCUUCCUUCACUGUGCCACUUCCUUGCGCGUCCUGCGCAGCAUAAAUUACGCAAUUCACUUUGGCGUCCUUUUUCCA
...........((((((.......))............(((((........(((((.....)))))))))).................))))............ ( -16.60)
>consensus
CCUUCCUUCCGGCCUUCUCGCCCCGCCCCU____UCACUCUGCCACUUCCUUGCGCGUCCUGCGCAGCAUAAAUUACGCAAUUCACUUUGGCGUCCUUUUUUCA
..........(((...........)))..............((((......(((((.....)))))((.........)).........))))............ (-14.43 = -14.68 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:05 2006